Browse Element(s) Details


OsAffx.4252.1.S1_x_at

Description tigr:9633.m00402
TID=OsAffx.4252.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to IRE homolog 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0471011/11incomplete root hair elongation, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04660OsAffx.4251.1.S1_at10/115+2174462..2175921uncharacterized domain 1 family protein, expressed
LOC_Os05g04670NANA5+2185023..2186785hypothetical protein
LOC_Os05g04680Os.50346.1.S1_at11/115+2190908..2191625expressed protein
LOC_Os05g04690Os.54044.1.S1_at11/115+2195575..2196641Basic endochitinase 2 precursor, putative, expressed
LOC_Os05g04690Os.36593.2.S1_x_at1/115+2195575..2196641Basic endochitinase 2 precursor, putative, expressed
LOC_Os05g04700Os.13968.1.S1_a_at6/115+2197918..2198479Uncharacterized protein family protein, expressed
LOC_Os05g04710OsAffx.4252.1.S1_x_at11/115+2200602..2203544incomplete root hair elongation, putative
LOC_Os05g04720NANA5+2204438..2204650hypothetical protein
LOC_Os05g04730OsAffx.19542.3.S1_x_at5/115+2211752..2215974retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g04740NANA5+2224915..2226893Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4252.1.S1_x_at--582--9415Chr08:8515127..8515150 (24 bp)
TCGTCGTCGTGTTGGTTGACCTCCT
NONE
OsAffx.4252.1.S1_x_at--437--7411Chr05:2202670..2202694 (25 bp)
GTGTTGGTTGACCTCCTCCATGAGC
LOC_Os05g04710
OsAffx.4252.1.S1_x_at--879--4331Chr05:2202687..2202711 (25 bp)
CCATGAGCGTGGCAGGCGGAGCAGC
LOC_Os05g04710
OsAffx.4252.1.S1_x_at--330--9131Chr05:2202766..2202790 (25 bp)
TGCGGCTGCGGAGCGGCGGTATGCG
LOC_Os05g04710
OsAffx.4252.1.S1_x_at--459--4671Chr05:2202781..2203098 (25 bp)
GCGGTATGCGCAGAAGGACAGCGGC
LOC_Os05g04710
OsAffx.4252.1.S1_x_at--704--7551Chr05:2203144..2203168 (25 bp)
GGGCGCCTGACGTGAAGAGCTTCTC
LOC_Os05g04710
OsAffx.4252.1.S1_x_at--822--2771Chr05:2203158..2203182 (25 bp)
AAGAGCTTCTCGCACGAGCTTAACA
LOC_Os05g04710
OsAffx.4252.1.S1_x_at--388--1871Chr05:2203171..2203195 (25 bp)
ACGAGCTTAACATGCGCGGGCCGCT
LOC_Os05g04710
OsAffx.4252.1.S1_x_at--377--2671Chr05:2203218..2203242 (25 bp)
AAGCCGCGCGTGTGCGTGAACAGTC
LOC_Os05g04710
OsAffx.4252.1.S1_x_at--642--492Chr10:19231478..19231502 (25 bp)
ATCGGCGCCATCAGGACCAAGTTCA
NONE
OsAffx.4252.1.S1_x_at--947--7411Chr05:2203314..2203338 (25 bp)
GTGTTTGCCAGGGACCTCGTCGCCG
LOC_Os05g04710
Target Sequence 
TCGTCGTCGTGTTGGTTGACCTCCTCCATGAGCGTGGCAGGCGGAGCAGCGGGGGGCGAGTGCGGCGGAGCAGCTGGCCT
GGTCGGCGAGCGGCGGGGGGCAAGTGCGGCTGCGGAGCGGCGGTATGCGCAGAAGGACAGCGGCGGCGGTTCAGGGCGAT
CCTGCGGGCGACGAGCAGGCGGCGGAAGCGGGCGCCTGACGTGAAGAGCTTCTCGCACGAGCTTAACATGCGCGGGCCGC
TCCTCCACCGGCTGCAGCAGCGGAAGCCGCGCGTGTGCGTGAACAGTCCGGAGGAGTTCATCGGCGCCATCAGGACCAAG
TTCATCAGGCTCAAGGAGGAGGTCGACGCCGAGCTCGGGGTGTTTGCCAGGGACCTCGTCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4252.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis