Browse Element(s) Details


Os.36593.2.S1_x_at

Description gb:NM_183568.1
DB_XREF= gi:34894263
TID=Os.36593.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1840010/1126 kDa endochitinase 1 precursor, putative, expressed
LOC_Os03g304701/11Basic endochitinase 2 precursor, putative, expressed
LOC_Os02g393301/11Endochitinase PR4 precursor, putative, expressed
LOC_Os05g046901/11Basic endochitinase 2 precursor, putative, expressed
LOC_Os05g331301/11Basic endochitinase A precursor, putative, expressed
LOC_Os04g416201/11Endochitinase A precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18370OsAffx.10738.2.S1_at10/111+10312861..10315287hypothetical protein
LOC_Os01g18370OsAffx.10738.1.S1_at8/111+10312861..10315287hypothetical protein
LOC_Os01g18390OsAffx.18764.2.S1_at11/111+10330316..10334290hypothetical protein
LOC_Os01g18400Os.36593.1.S1_at11/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18400Os.36593.2.S1_x_at10/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18400Os.36593.2.S1_at8/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18410Os.9858.2.S1_x_at11/111+10343489..10346650hypothetical protein
LOC_Os01g18410Os.9858.1.S1_at3/111+10343489..10346650hypothetical protein
LOC_Os01g18420OsAffx.11096.1.S1_at11/111+10349207..10349929SRF-type transcription factor family protein
LOC_Os01g18440OsAffx.11097.1.S1_at11/111+10363189..10364109SRF-type transcription factor family protein

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Gene Ontology Classification
GO idTypeName
GO:0009626biological_processhypersensitive response
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0050832biological_processdefense response to fungi
GO:0004568molecular_functionchitinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36593.2.S1_x_at--697--2911Chr01:10339894..10339918 (25 bp)
AAGGAGGAGATCAACCCGCAGAGCA
LOC_Os01g18400
Os.36593.2.S1_x_at--300--571NONE
ATCCAAATCTCATGTCACCAACGTA
NONE
Os.36593.2.S1_x_at--478--7111Chr01:10339331..10339355 (25 bp)
GTCACCAACGTAATGTATGCATGAT
LOC_Os01g18400
Os.36593.2.S1_x_at--504--4996Chr05:2196099..2196120 (22 bp)
GCAGGAACTTCAACTACGGGCCGGC
LOC_Os05g04690
Os.36593.2.S1_x_at--595--6251Chr01:10339257..10339281 (25 bp)
GATGGTCTGCGCAACCCGGAGATCG
LOC_Os01g18400
Os.36593.2.S1_x_at--847--1271Chr01:10339238..10339262 (25 bp)
AGATCGTGGCCAACTGCTCGGACAT
LOC_Os01g18400
Os.36593.2.S1_x_at--53--9091Chr01:10339224..10339248 (25 bp)
TGCTCGGACATAGCGTTCCAGACGG
LOC_Os01g18400
Os.36593.2.S1_x_at--965--7971Chr01:10339187..10339211 (25 bp)
GGATGACGCCGAGGGACACCAAGCC
LOC_Os01g18400
Os.36593.2.S1_x_at--866--1671Chr01:10339166..10339190 (25 bp)
AGCCGTCGTGCCACCAGGTGATGGT
LOC_Os01g18400
Os.36593.2.S1_x_at--606--3971Chr01:10339094..10339118 (25 bp)
CGGGCTTCGGGCTGGTCACCAACAT
LOC_Os01g18400
Os.36593.2.S1_x_at--852--9691Chr01:10339067..10339091 (25 bp)
TCAACGGCGGGCTCGAGTGCAACCG
LOC_Os01g18400
Target Sequence 
AAGGAGGAGATCAACCCGCAGAGCAGCTACTGCGACGCCACCGACAAGCAGTGGCCGTGCTACCCCGGCAAGTCCTACCA
TGGCCGAGGCCCCATCCAAATCTCATGTCACCAACGTAATGTATGCATGATGATGAGCAGGAACTTCAACTACGGGCCGG
CGGGCCAGGCCCTGGGCTTCGATGGTCTGCGCAACCCGGAGATCGTGGCCAACTGCTCGGACATAGCGTTCCAGACGGCG
CTGTGGTTCTGGATGACGCCGAGGGACACCAAGCCGTCGTGCCACCAGGTGATGGTCGGGGAGTACCGGCCCGGCCCGGC
CGACGTGGCGGCTAACCGCACGGCGGGCTTCGGGCTGGTCACCAACATCGTCAACGGCGGGCTCGAGTGCAACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36593.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis