Browse Element(s) Details


Os.9858.2.S1_x_at

Description gb:NM_183569.1
DB_XREF= gi:34894265
TID=Os.9858.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1841011/11hypothetical protein
LOC_Os06g356703/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18390OsAffx.18764.2.S1_at11/111+10330316..10334290hypothetical protein
LOC_Os01g18400Os.36593.1.S1_at11/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18400Os.36593.2.S1_x_at10/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18400Os.36593.2.S1_at8/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18410Os.9858.2.S1_x_at11/111+10343489..10346650hypothetical protein
LOC_Os01g18410Os.9858.1.S1_at3/111+10343489..10346650hypothetical protein
LOC_Os01g18420OsAffx.11096.1.S1_at11/111+10349207..10349929SRF-type transcription factor family protein
LOC_Os01g18440OsAffx.11097.1.S1_at11/111+10363189..10364109SRF-type transcription factor family protein
LOC_Os01g18450Os.36549.1.S1_at2/111+10366840..10367181expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9858.2.S1_x_at--373--3752Chr06:20823951..20823975 (25 bp)
CTCAGCGGAGCTCGGCGCCGTTCAT
LOC_Os06g35670
Os.9858.2.S1_x_at--6--9952Chr06:20823909..20823933 (25 bp)
TACCCTACCTGTGCAGTGTGCAGGT
LOC_Os06g35670
Os.9858.2.S1_x_at--95--1112Chr06:20823895..20823919 (25 bp)
AGTGTGCAGGTCGTGCCCGGAATCC
LOC_Os06g35670
Os.9858.2.S1_x_at--156--3651Chr01:10346491..10346515 (25 bp)
CTTCCCACAGGCGATCAAGGATCAG
LOC_Os01g18410
Os.9858.2.S1_x_at--834--7951Chr01:10346473..10346497 (25 bp)
GGATCAGCCCGACTTCGATGGGATC
LOC_Os01g18410
Os.9858.2.S1_x_at--26--9391Chr01:10346459..10346483 (25 bp)
TCGATGGGATCCCTCGACCTCGGTG
LOC_Os01g18410
Os.9858.2.S1_x_at--1051--7771Chr01:10346438..10346462 (25 bp)
GGTGCCGCCCAGGAAGATCATCGTC
LOC_Os01g18410
Os.9858.2.S1_x_at--24--951Chr01:10346428..10346452 (25 bp)
AGGAAGATCATCGTCACTCGCGGCG
LOC_Os01g18410
Os.9858.2.S1_x_at--659--4091Chr01:10346402..10346426 (25 bp)
CGCACAAGAAGTTCGTCGGGCTTTC
LOC_Os01g18410
Os.9858.2.S1_x_at--432--1231Chr01:10346393..10346417 (25 bp)
AGTTCGTCGGGCTTTCTGCTCCTTC
LOC_Os01g18410
Os.9858.2.S1_x_at--777--4151Chr01:10345275..10345299 (25 bp)
CGCCGCCGACGGAGCTGAGGTCATC
LOC_Os01g18410
Target Sequence 
CTCAGCGGAGCTCGGCGCCGTTCATCGCCCACTGCCTACCCCTACCCTACCTGTGCAGTGTGCAGGTCGTGCCCGGAATC
CCCGTGTCGCACCCCCTCCCCCTTCCCACAGGCGATCAAGGATCAGCCCGACTTCGATGGGATCCCTCGACCTCGGTGCC
GCCCAGGAAGATCATCGTCACTCGCGGCGCCGCACAAGAAGTTCGTCGGGCTTTCTGCTCCTTCCCTGTCGCATGGGCCT
CCTCGCCGGTGATATCCTCCCTTCTCACCCTCAGCTGGAGCCGACGTCCTCCCCATCTGCCGCCGCCGACGGAGCTGAGG
TCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9858.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis