Browse Element(s) Details


OsAffx.10738.2.S1_at

Description tigr:9629.m01784
TID=OsAffx.10738.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1837010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18320Os.5439.1.S1_a_at11/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18320OsAffx.20253.1.S1_x_at2/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18330OsAffx.23288.1.S1_at11/111+10294491..10294817hypothetical protein
LOC_Os01g18340NANA1+10300522..10300989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18350OsAffx.11095.1.S1_at11/111+10304895..10305419hypothetical protein
LOC_Os01g18360Os.18169.2.S1_x_at11/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.2.S1_at10/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.1.S1_at8/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18370OsAffx.10738.2.S1_at10/111+10312861..10315287hypothetical protein
LOC_Os01g18370OsAffx.10738.1.S1_at8/111+10312861..10315287hypothetical protein
LOC_Os01g18390OsAffx.18764.2.S1_at11/111+10330316..10334290hypothetical protein
LOC_Os01g18400Os.36593.1.S1_at11/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18400Os.36593.2.S1_x_at10/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18400Os.36593.2.S1_at8/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10738.2.S1_at--311--10251Chr01:10315218..10315242 (25 bp)
TTTTCGAAAGCGGATCGGATGGCGT
LOC_Os01g18370
OsAffx.10738.2.S1_at--135--5591Chr01:10314007..10314031 (25 bp)
GACGTTGTTCTTGAAAAACTTCCAT
LOC_Os01g18370
OsAffx.10738.2.S1_at--782--2411Chr01:10313994..10314018 (25 bp)
AAAAACTTCCATCTTGCATCGTTGC
LOC_Os01g18370
OsAffx.10738.2.S1_at--893--2391Chr01:10313992..10314016 (25 bp)
AAACTTCCATCTTGCATCGTTGCCA
LOC_Os01g18370
OsAffx.10738.2.S1_at--725--1711Chr01:10313968..10313992 (25 bp)
ACCACCATTACTGTATCAGCAACAT
LOC_Os01g18370
OsAffx.10738.2.S1_at--1097--9651NONE
TCAGCAACATAAGGTGCACGCCTGC
NONE
OsAffx.10738.2.S1_at--383--5451Chr01:10312908..10312932 (25 bp)
GAACGGAAGGTTTCCTCAAGGCTCA
LOC_Os01g18370
OsAffx.10738.2.S1_at--792--7331Chr01:10312904..10312928 (25 bp)
GGAAGGTTTCCTCAAGGCTCAAAGG
LOC_Os01g18370
OsAffx.10738.2.S1_at--475--6831Chr01:10312899..10312923 (25 bp)
GTTTCCTCAAGGCTCAAAGGGTGTT
LOC_Os01g18370
OsAffx.10738.2.S1_at--999--3731Chr01:10312894..10312918 (25 bp)
CTCAAGGCTCAAAGGGTGTTTCATG
LOC_Os01g18370
OsAffx.10738.2.S1_at--1152--2931Chr01:10312891..10312915 (25 bp)
AAGGCTCAAAGGGTGTTTCATGGAG
LOC_Os01g18370
Target Sequence 
TTTTCGAAAGCGGATCGGATGGCGTCTGAGGCGAATGCCGCAACCGTGGTGGATGGTGCATCTCCAAACGACGACTCGGG
AGAGAGACTGTGGGGACAGGAGAGAGATAGGGAGATACAGACATGGAGCGATGAAGCCAAGGCCAGCAACGGCGAGGCAC
ACCTTCTTCCTGAGCTTCGGAGCAGTAGAGGAGGAAAACCAACGCCGACGTTGTTCTTGAAAAACTTCCATCTTGCATCG
TTGCCACCACCATTACTGTATCAGCAACATAAGGTGCACGCCTGCGCCGGCAAGGTCGTCGTGCGGCCTGGGGATGTGTT
CGTGACACGCCGGCCGATGTGGCTGGCGTGTGTATACGCCAAGTGCGGACACATGGTGGCCATGACGAAGGCGTTCGACG
AAATGCCGCACCGGGGCGTGCCGTCCTGGAACGCGCTCATCGTGGGGCTACGCAAGGAACGGAAGGTTTCCTCAAGGCTC
AAAGGGTGTTTCATGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10738.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis