Browse Element(s) Details


Os.18169.1.S1_at

Description gb:AK103865.1
DB_XREF= gi:32989074
TID=Os.18169.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033149F09, full insert sequence.
FL= gb:AK103865.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g183608/11AUX/IAA family protein, expressed
LOC_Os05g431701/11Calreticulin-3 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18310Os.57179.1.S1_at5/111+10285754..10286422hypothetical protein
LOC_Os01g18310OsAffx.21147.1.S1_at1/111+10285754..10286422hypothetical protein
LOC_Os01g18320Os.5439.1.S1_a_at11/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18320OsAffx.20253.1.S1_x_at2/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18330OsAffx.23288.1.S1_at11/111+10294491..10294817hypothetical protein
LOC_Os01g18340NANA1+10300522..10300989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18350OsAffx.11095.1.S1_at11/111+10304895..10305419hypothetical protein
LOC_Os01g18360Os.18169.2.S1_x_at11/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.2.S1_at10/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.1.S1_at8/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18370OsAffx.10738.2.S1_at10/111+10312861..10315287hypothetical protein
LOC_Os01g18370OsAffx.10738.1.S1_at8/111+10312861..10315287hypothetical protein
LOC_Os01g18390OsAffx.18764.2.S1_at11/111+10330316..10334290hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009733biological_processresponse to auxin stimulus
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18169.1.S1_at--667--5751NONE
GACGTCCCATGGGAACTCTTCCTGA
NONE
Os.18169.1.S1_at--322--7611Chr01:10311245..10311265 (21 bp)
GGGAACTCTTCCTGAGCAGCGTAAA
LOC_Os01g18360
Os.18169.1.S1_at--708--2493Chr01:10311300..10311324 (25 bp)
AACAGTTGCATTTGAATTTCTCTTT
LOC_Os01g18360
Os.18169.1.S1_at--553--9291Chr01:10311342..10311366 (25 bp)
TCCCATTGGAGGGAGGGCCCTTATT
LOC_Os01g18360
Os.18169.1.S1_at--29--6131Chr01:10311354..10311378 (25 bp)
GAGGGCCCTTATTATATGTAGGTTA
LOC_Os01g18360
Os.18169.1.S1_at--610--6051Chr01:10311404..10311428 (25 bp)
GAGATTATACTTACTAGCAGTGTAC
LOC_Os01g18360
Os.18169.1.S1_at--63--1551Chr01:10311447..10311471 (25 bp)
AGCATTATCAGCTACCTACCGTATA
LOC_Os01g18360
Os.18169.1.S1_at--86--3691Chr01:10311458..10311482 (25 bp)
CTACCTACCGTATAGCAGAACTGAT
LOC_Os01g18360
Os.18169.1.S1_at--179--10212Chr04:27062847..27062866 (20 bp)
TATTTTTCCTCTACTTCTTTAACTG
NONE
Os.18169.1.S1_at--6--6652Chr05:24973167..24973662 (25 bp)
GTTGATAACACAAAGGTTCCATTTT
LOC_Os05g43170
Os.18169.1.S1_at--195--9971Chr01:10311574..10311598 (25 bp)
TACCTCAGTGGAATCAAATTTTGTG
NONE
Target Sequence 
GACGTCCCATGGGAACTCTTCCTGAGCAGCGTAAAGAAGCTCAGGATTGCAAGGATGGATAAATGCTAAAACAGTTGCAT
TTGAATTTCTCTTTGTTTCTTCTTTTTTTTTTCCCATTGGAGGGAGGGCCCTTATTATATGTAGGTTAGTTGAAAAAGAT
TTTTGCTGAAGCTGAGATTATACTTACTAGCAGTGTACATTATAGTAAAGAAGTGTAGCATTATCAGCTACCTACCGTAT
AGCAGAACTGATTATTATTTTTCCTCTACTTCTTTAACTGGTTTGTAAATATCATGTATTCGTTAAAGAGAGTAGAGAAG
TTGATAACACAAAGGTTCCATTTTACCTCAGTGGAATCAAATTTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis