Browse Element(s) Details


Os.5439.1.S1_a_at

Description gb:AB057749.1
DB_XREF= gi:13429991
GEN=PPOX-IProtox-I
TID=Os.5439.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5439 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) PPOX-IProtox-I mRNA for protoporphyrinogen oxidase I, complete cds.
PROD=protoporphyrinogen oxidase I
FL= gb:AB057749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1832011/11Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18280OsAffx.31543.1.S1_x_at11/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.1.S1_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_x_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_at9/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18290Os.27705.1.S1_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.1.S1_a_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.3.S1_at2/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18300OsAffx.22253.2.S1_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18300OsAffx.22253.2.S1_s_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18310Os.57179.1.S1_at5/111+10285754..10286422hypothetical protein
LOC_Os01g18310OsAffx.21147.1.S1_at1/111+10285754..10286422hypothetical protein
LOC_Os01g18320Os.5439.1.S1_a_at11/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18320OsAffx.20253.1.S1_x_at2/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18330OsAffx.23288.1.S1_at11/111+10294491..10294817hypothetical protein
LOC_Os01g18340NANA1+10300522..10300989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18350OsAffx.11095.1.S1_at11/111+10304895..10305419hypothetical protein
LOC_Os01g18360Os.18169.2.S1_x_at11/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.2.S1_at10/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.1.S1_at8/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18370OsAffx.10738.2.S1_at10/111+10312861..10315287hypothetical protein
LOC_Os01g18370OsAffx.10738.1.S1_at8/111+10312861..10315287hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006779biological_processporphyrin biosynthesis
GO:0004729molecular_functionprotoporphyrinogen oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5439.1.S1_a_at--307--10751Chr01:10291706..10291730 (25 bp)
TTGACCGTGACCTCAGGAAGATGCT
LOC_Os01g18320
Os.5439.1.S1_a_at--711--10851Chr01:10291763..10291787 (25 bp)
TTGGCGTCCGGGTATGGCCACAAGC
LOC_Os01g18320
Os.5439.1.S1_a_at--1006--3551Chr01:10291810..10291834 (25 bp)
CATCTTGATCATCTTGAGGCTGCAA
LOC_Os01g18320
Os.5439.1.S1_a_at--383--8331Chr01:10291827..10291851 (25 bp)
GGCTGCAAAATCTGCCCTGGGCAAA
LOC_Os01g18320
Os.5439.1.S1_a_at--31--10131Chr01:10291885..10291909 (25 bp)
TATGTTGCAGGAGTTGCCCTGGGCC
LOC_Os01g18320
Os.5439.1.S1_a_at--498--6111Chr01:10291932..10291956 (25 bp)
GAGTGCCTCACAAATATCTGACTAC
LOC_Os01g18320
Os.5439.1.S1_a_at--986--5851Chr01:10291959..10291983 (25 bp)
GACCAAGTACGCCTACAAGTGATCA
LOC_Os01g18320
Os.5439.1.S1_a_at--248--1111Chr01:10291976..10292000 (25 bp)
AGTGATCAAAGTTGGCCTGCTCCTT
LOC_Os01g18320
Os.5439.1.S1_a_at--894--792Chr01:10292040..10292064 (25 bp)
ATGGGCATCTTTTTATCCTGATTCT
LOC_Os01g18320
Os.5439.1.S1_a_at--424--8211Chr01:10292091..10292115 (25 bp)
GGAATGTTCCATTTGCAGTTCATAA
LOC_Os01g18320
Os.5439.1.S1_a_at--587--6751Chr01:10292121..10292145 (25 bp)
GTTCAGATTTCAGCCATTCAATTTG
LOC_Os01g18320
Target Sequence 
TTGACCGTGACCTCAGGAAGATGCTGATAAATCCTAAAGCAGTGGACCCTTTGGTCCTTGGCGTCCGGGTATGGCCACAA
GCCATACCACAGTTCCTCATTGGCCATCTTGATCATCTTGAGGCTGCAAAATCTGCCCTGGGCAAAGGTGGTTATGATGG
ATTGTTCCTCGGAGGGAACTATGTTGCAGGAGTTGCCCTGGGCCGATGCGTTGAAGGTGCATATGAGAGTGCCTCACAAA
TATCTGACTACTTGACCAAGTACGCCTACAAGTGATCAAAGTTGGCCTGCTCCTTTTGGCACATAGATGTGAGGCTTCTA
GCAGCAAAAATTTCATGGGCATCTTTTTATCCTGATTCTAATTAGTTAGAATTTAGAATTGTAGAGGAATGTTCCATTTG
CAGTTCATAATAGTTGTTCAGATTTCAGCCATTCAATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5439.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis