Browse Element(s) Details


Os.29809.1.S1_at

Description gb:AK109824.1
DB_XREF= gi:32995033
TID=Os.29809.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0498A12.23 (P0498A12.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-B01, full insert sequence.
FL= gb:AK109824.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1828010/11SNF7 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18260Os.47463.1.S1_x_at6/111+10244863..10248561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18260Os.14491.2.S1_x_at5/111+10244863..10248561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270Os.27037.1.A1_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270OsAffx.8160.1.S1_x_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270Os.50196.2.S1_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18280OsAffx.31543.1.S1_x_at11/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.1.S1_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_x_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_at9/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18290Os.27705.1.S1_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.1.S1_a_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.3.S1_at2/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18300OsAffx.22253.2.S1_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18300OsAffx.22253.2.S1_s_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18310Os.57179.1.S1_at5/111+10285754..10286422hypothetical protein
LOC_Os01g18310OsAffx.21147.1.S1_at1/111+10285754..10286422hypothetical protein
LOC_Os01g18320Os.5439.1.S1_a_at11/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18320OsAffx.20253.1.S1_x_at2/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29809.1.S1_at--504--7111Chr01:10262998..10263022 (25 bp)
GTCAGCTTATCGATATGTGCGGCAG
LOC_Os01g18280
Os.29809.1.S1_at--795--8691Chr01:10263013..10263037 (25 bp)
TGTGCGGCAGTCTAAGTTGTTCTCA
LOC_Os01g18280
Os.29809.1.S1_at--593--5131Chr01:10263235..10263259 (25 bp)
GCAATCAAAGTCAGTATTCAGGCGA
LOC_Os01g18280
Os.29809.1.S1_at--31--10771NONE
TTGATGCTGCCTTAGGATCAGTAAT
NONE
Os.29809.1.S1_at--1122--7951Chr01:10264403..10264427 (25 bp)
GGATCAGTAATACTCCAGTCAATGG
LOC_Os01g18280
Os.29809.1.S1_at--1035--1471Chr01:10264471..10264495 (25 bp)
AGAATTGCAGGATGAGTTTCCTCAC
LOC_Os01g18280
Os.29809.1.S1_at--422--3791Chr01:10264586..10264610 (25 bp)
CTCGAGGCCATCTAGATTTTCACTT
LOC_Os01g18280
Os.29809.1.S1_at--43--7331Chr01:10264616..10264640 (25 bp)
GTGCTACTTGTACATATCGTGATCT
LOC_Os01g18280
Os.29809.1.S1_at--103--7411Chr01:10264634..10264658 (25 bp)
GTGATCTAGTCACATCTTTTGCCCC
LOC_Os01g18280
Os.29809.1.S1_at--483--1171Chr01:10264641..10264665 (25 bp)
AGTCACATCTTTTGCCCCATCAGTA
LOC_Os01g18280
Os.29809.1.S1_at--171--6891Chr01:10264672..10264696 (25 bp)
GTATTTCTTATGACAATGTTCCTAC
LOC_Os01g18280
Target Sequence 
GTCAGCTTATCGATATGTGCGGCAGTCTAAGTTGTTCTCAGAAAGCAGGAAAAGATTCACACCACTGCTGGAGAGGGTTG
AAGAAGTTATAAGCCTAATTGCTAGTGCTGAAACAACTAAGAAGGTTAATGAGGCAATCAAAGTCAGTATTCAGGCGATG
AATGAGCATCATGTGAGCGTAGAGGAGGTTAACGAGCACCTAAAGGAGGTTGATGACCTTGTTGCAACACAAAGAGAAAT
TGATGCTGCCTTAGGATCAGTAATACTCCAGTCAATGGATTCTGAAGAAAATATCGAGGAAGAATTCATGAAGCTGGAAG
CAGAATTGCAGGATGAGTTTCCTCACGTTCAAGAAGATCCAGTTTCACATGCCAATGAAGAATTTCCTAATGATGAAGAT
GTTGATTCATTGAGCAATAACCTTTCAAACATTAAACTCGAGGCCATCTAGATTTTCACTTATTAAGTGCTACTTGTACA
TATCGTGATCTAGTCACATCTTTTGCCCCATCAGTATGTGTTGTATTTCTTATGACAATGTTCCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis