Browse Element(s) Details


OsAffx.31543.1.S1_x_at

Description gb:NM_187733.1
DB_XREF= gi:34902551
GEN=P0498A12.22
TID=OsAffx.31543.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0498A12.22 (P0498A12.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1828011/11SNF7 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18260Os.47463.1.S1_x_at6/111+10244863..10248561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18260Os.14491.2.S1_x_at5/111+10244863..10248561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270Os.27037.1.A1_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270OsAffx.8160.1.S1_x_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270Os.50196.2.S1_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18280OsAffx.31543.1.S1_x_at11/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.1.S1_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_x_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_at9/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18290Os.27705.1.S1_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.1.S1_a_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.3.S1_at2/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18300OsAffx.22253.2.S1_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18300OsAffx.22253.2.S1_s_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18310Os.57179.1.S1_at5/111+10285754..10286422hypothetical protein
LOC_Os01g18310OsAffx.21147.1.S1_at1/111+10285754..10286422hypothetical protein
LOC_Os01g18320Os.5439.1.S1_a_at11/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18320OsAffx.20253.1.S1_x_at2/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31543.1.S1_x_at--463--8133Chr01:10260089..10260183 (25 bp)
GGACTTCCTTGTCGGTGCTCACTGC
LOC_Os01g18280
OsAffx.31543.1.S1_x_at--457--10673Chr01:10260093..10260187 (25 bp)
TTCCTTGTCGGTGCTCACTGCTGGG
LOC_Os01g18280
OsAffx.31543.1.S1_x_at--225--10031Chr01:10260197..10260221 (25 bp)
TAGAATCCAACGCCATCGGCGCTGC
LOC_Os01g18280
OsAffx.31543.1.S1_x_at--814--8711Chr01:10260228..10260252 (25 bp)
TGTCGCCACCGCGAAGAGCCGAGAG
LOC_Os01g18280
OsAffx.31543.1.S1_x_at--430--8091Chr01:10260529..10260553 (25 bp)
GGAGCCCCCTAGAATCCGATGCCAT
LOC_Os01g18280
OsAffx.31543.1.S1_x_at--903--7551Chr01:10260685..10260709 (25 bp)
GGTGGCGGACGGCTAGGCGAGCGGC
LOC_Os01g18280
OsAffx.31543.1.S1_x_at--218--5173Chr02:22428976..22429086 (25 bp)
GCAAGAGAGAGATGACCGCCGCCGC
NONE
OsAffx.31543.1.S1_x_at--432--6991Chr01:10260740..10260764 (25 bp)
GTACTTTACACCACCCAGCAAGAGG
LOC_Os01g18280
OsAffx.31543.1.S1_x_at--992--3671Chr01:10260743..10260767 (25 bp)
CTTTACACCACCCAGCAAGAGGAGG
LOC_Os01g18280
OsAffx.31543.1.S1_x_at--129--10471Chr01:10260745..10260769 (25 bp)
TTACACCACCCAGCAAGAGGAGGGA
LOC_Os01g18280
OsAffx.31543.1.S1_x_at--806--1712Chr08:27998662..27998681 (20 bp)
ACCACCCAGCAAGAGGAGGGAGCAG
NONE
Target Sequence 
GGACTTCCTTGTCGGTGCTCACTGCTGGGGAGGCCCCCTAGAATCCAACGCCATCGGCGCTGCCATCCGTGTCGCCACCG
CGAAGAGCCGAGAGGGGGAAGGGAATGACAAGGAGGAGGACTTCCTTGTCGGGTCCGCCCGGGGTGCCACCGCCGCGGCG
GCGGCGAGAGCCAAGATGGGGAAGGGAATGACGAGGAGGAGGACTTCCTTGTCGGGTCTGCCCGGGGCGCCGCCGCCTTC
TTCTCTGGCGCAGTGCTCGGTGCTGGGGAGCCCCCTAGAATCCGATGCCATCGACGCCGCCATCCGTGTCGCCGCCGCCG
ACCACCCGGACGCCCTCCTCTCGCCGCCGCTTCCTCCTCTCTCGCCGCCAACGCCACCACACGCCGCTCCCTCTTCTCCC
GCCGGCGGCCATCAGGGAGGAGGGTGGCGGACGGCTAGGCGAGCGGCGCAAGAGAGAGATGACCGCCGCCGCCCGCCGTA
CTTTACACCACCCAGCAAGAGGAGGGAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31543.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis