Browse Element(s) Details


OsAffx.23288.1.S1_at

Description tigr:9629.m01780
TID=OsAffx.23288.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1833011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18290Os.27705.1.S1_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.1.S1_a_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.3.S1_at2/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18300OsAffx.22253.2.S1_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18300OsAffx.22253.2.S1_s_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18310Os.57179.1.S1_at5/111+10285754..10286422hypothetical protein
LOC_Os01g18310OsAffx.21147.1.S1_at1/111+10285754..10286422hypothetical protein
LOC_Os01g18320Os.5439.1.S1_a_at11/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18320OsAffx.20253.1.S1_x_at2/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18330OsAffx.23288.1.S1_at11/111+10294491..10294817hypothetical protein
LOC_Os01g18340NANA1+10300522..10300989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18350OsAffx.11095.1.S1_at11/111+10304895..10305419hypothetical protein
LOC_Os01g18360Os.18169.2.S1_x_at11/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.2.S1_at10/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.1.S1_at8/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18370OsAffx.10738.2.S1_at10/111+10312861..10315287hypothetical protein
LOC_Os01g18370OsAffx.10738.1.S1_at8/111+10312861..10315287hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23288.1.S1_at--862--3711Chr01:10294536..10294560 (25 bp)
CTACCACACTTTCGCGTGTTAGGAA
LOC_Os01g18330
OsAffx.23288.1.S1_at--867--3231Chr01:10294540..10294564 (25 bp)
CACACTTTCGCGTGTTAGGAACCCG
LOC_Os01g18330
OsAffx.23288.1.S1_at--1069--9311Chr01:10294547..10294571 (25 bp)
TCGCGTGTTAGGAACCCGTTGGTTG
LOC_Os01g18330
OsAffx.23288.1.S1_at--405--8771Chr01:10294552..10294576 (25 bp)
TGTTAGGAACCCGTTGGTTGCAGCG
LOC_Os01g18330
OsAffx.23288.1.S1_at--724--3511Chr01:10294580..10294604 (25 bp)
CATGCTAACGTGCTGTGAGAGATCA
LOC_Os01g18330
OsAffx.23288.1.S1_at--931--7171Chr01:10294632..10294656 (25 bp)
GTCGGTACATGGGAGGACGGTGTTA
LOC_Os01g18330
OsAffx.23288.1.S1_at--741--5731Chr01:10294647..10294671 (25 bp)
GACGGTGTTAGGAACCTAAGCACTT
LOC_Os01g18330
OsAffx.23288.1.S1_at--603--6771Chr01:10294653..10294677 (25 bp)
GTTAGGAACCTAAGCACTTCATGGG
LOC_Os01g18330
OsAffx.23288.1.S1_at--28--4791Chr01:10294731..10294755 (25 bp)
GCTGCCTGGAACTTCCATTGTGACG
LOC_Os01g18330
OsAffx.23288.1.S1_at--918--3891Chr01:10294736..10294760 (25 bp)
CTGGAACTTCCATTGTGACGATGAA
LOC_Os01g18330
OsAffx.23288.1.S1_at--59--2071Chr01:10294741..10294765 (25 bp)
ACTTCCATTGTGACGATGAAAGCGG
LOC_Os01g18330
Target Sequence 
CTACCACACTTTCGCGTGTTAGGAACCCGTTGGTTGCAGCGGGGCATGCTAACGTGCTGTGAGAGATCAGGGGTGCTGGA
TGGTGATGGTGTAGGAGTCGGTACATGGGAGGACGGTGTTAGGAACCTAAGCACTTCATGGGGTGCTGCCTGGAACTTCC
ATTGTGACGATGAAAGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis