Browse Element(s) Details


Os.55031.2.S1_x_at

Description gb:AK110841.1
DB_XREF= gi:32996050
TID=Os.55031.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-B06, full insert sequence.
FL= gb:AK110841.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0460011/11CjMDR1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04584Os.9847.1.S1_at11/115+2121913..2128292Transferase family protein, expressed
LOC_Os05g04584Os.55688.1.S1_at1/115+2121913..2128292Transferase family protein, expressed
LOC_Os05g04600Os.55031.2.S1_x_at11/115+2143260..2144910CjMDR1, putative, expressed
LOC_Os05g04610Os.27393.1.S1_s_at11/115+2146997..2149527ABC transporter family protein, expressed
LOC_Os05g04610Os.27393.1.S1_a_at11/115+2146997..2149527ABC transporter family protein, expressed
LOC_Os05g04620Os.5191.1.S1_at10/115+2150222..2152229expressed protein
LOC_Os05g04630Os.4168.1.S1_s_at11/115+2152939..2157111Aspartic proteinase precursor, putative, expressed
LOC_Os05g04640OsAffx.14545.1.S1_x_at11/115+2157537..2162957WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009926biological_processauxin polar transport
GO:0016020cellular_componentmembrane
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55031.2.S1_x_at--7--4331Chr05:2144350..2144374 (25 bp)
CCATCGGCTCCATCAGAACAGTAAA
LOC_Os05g04600
Os.55031.2.S1_x_at--832--3831Chr05:2144428..2144452 (25 bp)
CTGAACACCCGGCTCAACACAGGTT
LOC_Os05g04600
Os.55031.2.S1_x_at--359--3731Chr05:2144440..2144464 (25 bp)
CTCAACACAGGTTGCGTCGTTCACC
LOC_Os05g04600
Os.55031.2.S1_x_at--569--10711Chr05:2144451..2144475 (25 bp)
TTGCGTCGTTCACCGGCGAGAAGCA
LOC_Os05g04600
Os.55031.2.S1_x_at--827--2771Chr05:2144504..2144528 (25 bp)
AAGAGAGCGTACAGCTCCGGCGTCA
LOC_Os05g04600
Os.55031.2.S1_x_at--964--811Chr05:2144567..2144591 (25 bp)
ATGGTGCTCCTCTTCTGTGGCTACT
LOC_Os05g04600
Os.55031.2.S1_x_at--631--7831Chr05:2144604..2144628 (25 bp)
GGTACGGTGCCAAGCTGATTCTGGA
LOC_Os05g04600
Os.55031.2.S1_x_at--16--1071Chr05:2144631..2144655 (25 bp)
AGGGATACACCGGAGCTCAGGTCAT
LOC_Os05g04600
Os.55031.2.S1_x_at--502--3471Chr05:2144648..2144672 (25 bp)
CAGGTCATGAATGTCATCTTCGCCG
LOC_Os05g04600
Os.55031.2.S1_x_at--1058--3731Chr05:2144675..2144699 (25 bp)
CTCACCGGCTCGCTGTAAGTTTCGC
LOC_Os05g04600
Os.55031.2.S1_x_at--957--4191Chr05:2144702..2144726 (25 bp)
CCCCGCGAGCTTCTTGATCAATTCT
LOC_Os05g04600
Target Sequence 
CCATCGGCTCCATCAGAACAGTAAAAACATTCCGTCGAACACCTCAGCTACCATCCATTTCTCCGCGCCGCCATGGCCCT
GAACACCCGGCTCAACACAGGTTGCGTCGTTCACCGGCGAGAAGCAGGCGGTGGCGAAGTACAGTAGGTCACTGAAGAGA
GCGTACAGCTCCGGCGTCAGGGAGGGGCTCGCCGCCGGCGTGGGCATGGGCACGGTGATGGTGCTCCTCTTCTGTGGCTA
CTCATTGGGGATTTGGTACGGTGCCAAGCTGATTCTGGAGAAGGGATACACCGGAGCTCAGGTCATGAATGTCATCTTCG
CCGTGCTCACCGGCTCGCTGTAAGTTTCGCCGCCCCGCGAGCTTCTTGATCAATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55031.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis