Browse Element(s) Details


Os.54026.1.S1_at

Description gb:AK101387.1
DB_XREF= gi:32986596
TID=Os.54026.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033036G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033036G05, full insert sequence.
FL= gb:AK101387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g045609/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04520Os.11747.1.S1_at11/115+2074051..2078447Protein kinase domain containing protein, expressed
LOC_Os05g04530Os.54413.1.S1_at11/115+2078667..2082871expressed protein
LOC_Os05g04540OsAffx.26729.1.S1_at10/115+2089269..2091023expressed protein
LOC_Os05g04550Os.50890.1.S1_at11/115+2091611..2095106CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os05g04560Os.54026.1.S1_at9/115+2100882..2105585expressed protein
LOC_Os05g04560Os.17844.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560Os.52782.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560OsAffx.7578.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560Os.17844.1.S1_x_at1/115+2100882..2105585expressed protein
LOC_Os05g04570OsAffx.19451.1.S1_at11/115+2107268..2110831hypothetical protein
LOC_Os05g04570OsAffx.19451.2.S1_s_at11/115+2107268..2110831hypothetical protein
LOC_Os05g04570Os.56177.1.S1_at2/115+2107268..2110831hypothetical protein
LOC_Os05g04570OsAffx.19451.3.S1_x_at1/115+2107268..2110831hypothetical protein
LOC_Os05g04584Os.9847.1.S1_at11/115+2121913..2128292Transferase family protein, expressed
LOC_Os05g04584Os.55688.1.S1_at1/115+2121913..2128292Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54026.1.S1_at--286--9951NONE
TACGCTCAGCTCAACGATTGCTCAA
NONE
Os.54026.1.S1_at--323--6691Chr05:2104720..2104744 (25 bp)
GTTGCCCTCACCTGAGCATATGTAG
LOC_Os05g04560
Os.54026.1.S1_at--1010--331NONE
ATACAGCCTGTGATGATGCCGTTAG
NONE
Os.54026.1.S1_at--424--6791Chr05:2105090..2105114 (25 bp)
GTTAGTACAGAGTTGTTCCCTCTCT
LOC_Os05g04560
Os.54026.1.S1_at--937--4271Chr05:2105155..2105179 (25 bp)
CCTCCATTGCTGTCAAGGTGATGTT
LOC_Os05g04560
Os.54026.1.S1_at--150--311Chr05:2105379..2105403 (25 bp)
ATACCAATCACTTCATTTCAGCTTC
LOC_Os05g04560
Os.54026.1.S1_at--1033--9811Chr05:2105408..2105432 (25 bp)
TAACAAGCAGCCAAGGTCTCTTCAC
LOC_Os05g04560
Os.54026.1.S1_at--699--7811Chr05:2105422..2105446 (25 bp)
GGTCTCTTCACGGATTATTGTCCAT
LOC_Os05g04560
Os.54026.1.S1_at--582--10231Chr05:2105437..2105461 (25 bp)
TATTGTCCATGGATGGCCAAGCTTT
LOC_Os05g04560
Os.54026.1.S1_at--633--151Chr05:2105495..2105519 (25 bp)
ATTATTCCCTTGCTCCATAAAGCTT
LOC_Os05g04560
Os.54026.1.S1_at--427--9091Chr05:2105540..2105564 (25 bp)
TGCTCTGCAAGCTGACATTCCATTT
LOC_Os05g04560
Target Sequence 
TACGCTCAGCTCAACGATTGCTCAAACTACAATGGGCAATAACAATATTGCATTTGAGGGCCTCATTTTTGGTTGCCCTC
ACCTGAGCATATGTAGGATACAGCCTGTGATGATGCCGTTAGTACAGAGTTGTTCCCTCTCTCAGCCTCCCACCATCTTC
TCCTGTCTCTCTCTGAGCATCACCTCCATTGCTGTCAAGGTGATGTTTGAGCTCAATCGGTCAAAGAAGGTTGAATATGT
AAATAATTTGCCAACATGATTTTCTCATATTGGGTGGTTTAGTAAGTTAACACTTAATACCAATCACTTCATTTCAGCTT
CTCACTAACAAGCAGCCAAGGTCTCTTCACGGATTATTGTCCATGGATGGCCAAGCTTTTCAGCAAAATGAAAAGGTGAA
ATATAATGAAATATTATTCCCTTGCTCCATAAAGCTTCAGATGTGGAGTGAGCTTGCTGCTCTGCAAGCTGACATTCCAT
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis