Browse Element(s) Details


OsAffx.31548.1.S1_x_at

Description tigr:9640.m00101
TID=OsAffx.31548.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0199010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01930Os.16743.1.S1_at11/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_s_at11/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_x_at7/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_at6/1112+553442..557636expressed protein
LOC_Os12g01940Os.16743.3.S1_x_at7/1112+558283..561829expressed protein
LOC_Os12g01940Os.16743.3.S1_at6/1112+558283..561829expressed protein
LOC_Os12g01950Os.9846.1.S1_x_at7/1112+561988..564691expressed protein
LOC_Os12g01950Os.9846.2.S1_at1/1112+561988..564691expressed protein
LOC_Os12g01950OsAffx.9909.2.S1_x_at1/1112+561988..564691expressed protein
LOC_Os12g01950OsAffx.9909.1.S1_at1/1112+561988..564691expressed protein
LOC_Os12g01960OsAffx.31546.2.S1_at11/1112+567945..569943expressed protein
LOC_Os12g01970OsAffx.19451.2.S1_s_at11/1112+576960..578223hypothetical protein
LOC_Os12g01970OsAffx.19451.3.S1_x_at1/1112+576960..578223hypothetical protein
LOC_Os12g01980OsAffx.31547.1.S1_at11/1112+578828..579954hypothetical protein
LOC_Os12g01990OsAffx.31548.1.S1_at11/1112+580870..582002hypothetical protein
LOC_Os12g01990OsAffx.31548.1.S1_x_at10/1112+580870..582002hypothetical protein
LOC_Os12g02000Os.52045.1.S1_at11/1112+582904..584609expressed protein
LOC_Os12g02000Os.51572.1.S1_x_at1/1112+582904..584609expressed protein
LOC_Os12g02010OsAffx.22759.1.S1_at8/1112+591045..593348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g02020Os.51497.1.A1_s_at11/1112+598639..601697expressed protein
LOC_Os12g02020OsAffx.7458.1.S1_x_at10/1112+598639..601697expressed protein
LOC_Os12g02020Os.18660.1.S1_x_at1/1112+598639..601697expressed protein
LOC_Os12g02030Os.8562.1.S1_a_at11/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02030Os.8562.2.S1_x_at10/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02030Os.8562.1.S1_x_at4/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02040Os.46087.1.S1_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.12584.1.S1_x_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_x_at7/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_at3/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31548.1.S1_x_at--884--7891Chr12:581578..581602 (25 bp)
GGTTCGAAGTCCTCGAGAAGATGAG
LOC_Os12g01990
OsAffx.31548.1.S1_x_at--682--8591Chr12:581542..581566 (25 bp)
TGGTCGAGTCGGTTTCTGGGTTCCA
LOC_Os12g01990
OsAffx.31548.1.S1_x_at--110--4031Chr12:581538..581562 (25 bp)
CGAGTCGGTTTCTGGGTTCCAGGAT
LOC_Os12g01990
OsAffx.31548.1.S1_x_at--826--9431Chr12:581534..581558 (25 bp)
TCGGTTTCTGGGTTCCAGGATTACT
LOC_Os12g01990
OsAffx.31548.1.S1_x_at--386--10551Chr12:581529..581553 (25 bp)
TTCTGGGTTCCAGGATTACTTCGAC
LOC_Os12g01990
OsAffx.31548.1.S1_x_at--484--7671Chr12:581525..581549 (25 bp)
GGGTTCCAGGATTACTTCGACACCG
LOC_Os12g01990
OsAffx.31548.1.S1_x_at--278--10671Chr12:581522..581546 (25 bp)
TTCCAGGATTACTTCGACACCGCGC
LOC_Os12g01990
OsAffx.31548.1.S1_x_at--736--871NONE
ATGGCGCTCCAGAGCAACCTCAGCT
NONE
OsAffx.31548.1.S1_x_at--106--1511Chr12:580931..580955 (25 bp)
AGCACTACGTCCATCGACATCGAGA
LOC_Os12g01990
OsAffx.31548.1.S1_x_at--177--4091Chr12:580917..580941 (25 bp)
CGACATCGAGACGTGGGTTTCCATT
LOC_Os12g01990
OsAffx.31548.1.S1_x_at--727--8631Chr12:580904..580928 (25 bp)
TGGGTTTCCATTGGGGTCCTCGCTG
LOC_Os12g01990
Target Sequence 
GGTTCGAAGTCCTCGAGAAGATGAGGAGGGAGCAGCTGGTCGAGTCGGTTTCTGGGTTCCAGGATTACTTCGACACCGCG
CCCTCCACCGGCACGAACGACGACGCCTCCTCCGTCGACCACTGCGTCGGCCCGATCCTCATGGCGCTCCAGAGCAACCT
CAGCTCCCCCCACGCCGCCTCCTTCCTCGACGCCGACCACCGCCAGGCCGCCTCGTCCTCTTCCTCCCGCGTTGCCGCCG
CCACCGTCGACAGCTACGCCTCCACCTCCTTCCCCGACGCCCATCAGCGCGACCCCGCCGCCACCATCGCCGCCGACCAC
AGCGAGGCCACCGCCTCCTCCTCCCGCATCGCCTCCGCCTCCGCCTCCGCCTCCGCCTGCCACAGCGACCCCGCCGCCAC
CATCGCCGCCGACCACAGCGAGGCCACCGCCTCCTCCTCCCGCATCGCCTCCGCCTCCGCCTGCCACAGCGACCCCGCCT
CCGCCTCCCTCGACCAGCACTACGTCCATCGACATCGAGACGTGGGTTTCCATTGGGGTCCTCGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31548.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis