Browse Element(s) Details


Os.51497.1.A1_s_at

Description gb:AK062951.1
DB_XREF= gi:32972969
TID=Os.51497.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-C08, full insert sequence.
FL= gb:AK062951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0202011/11expressed protein
LOC_Os11g0205411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01970OsAffx.19451.2.S1_s_at11/1112+576960..578223hypothetical protein
LOC_Os12g01970OsAffx.19451.3.S1_x_at1/1112+576960..578223hypothetical protein
LOC_Os12g01980OsAffx.31547.1.S1_at11/1112+578828..579954hypothetical protein
LOC_Os12g01990OsAffx.31548.1.S1_at11/1112+580870..582002hypothetical protein
LOC_Os12g01990OsAffx.31548.1.S1_x_at10/1112+580870..582002hypothetical protein
LOC_Os12g02000Os.52045.1.S1_at11/1112+582904..584609expressed protein
LOC_Os12g02000Os.51572.1.S1_x_at1/1112+582904..584609expressed protein
LOC_Os12g02010OsAffx.22759.1.S1_at8/1112+591045..593348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g02020Os.51497.1.A1_s_at11/1112+598639..601697expressed protein
LOC_Os12g02020OsAffx.7458.1.S1_x_at10/1112+598639..601697expressed protein
LOC_Os12g02020Os.18660.1.S1_x_at1/1112+598639..601697expressed protein
LOC_Os12g02030Os.8562.1.S1_a_at11/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02030Os.8562.2.S1_x_at10/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02030Os.8562.1.S1_x_at4/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02040Os.46087.1.S1_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.12584.1.S1_x_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_x_at7/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_at3/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02050OsAffx.18633.1.S1_at11/1112+609165..611432expressed protein
LOC_Os12g02050OsAffx.18633.1.S1_s_at11/1112+609165..611432expressed protein
LOC_Os12g02050OsAffx.18633.2.S1_at1/1112+609165..611432expressed protein
LOC_Os12g02060Os.55595.1.S1_at5/1112+613316..614845Cationic peroxidase 1 precursor, putative, expressed
LOC_Os12g02070Os.50351.1.S1_s_at3/1112+615651..616635expressed protein
LOC_Os12g02070Os.50351.1.S1_at1/1112+615651..616635expressed protein
LOC_Os12g02080Os.11549.1.S1_at11/1112+622582..625113Peroxidase 52 precursor, putative, expressed
LOC_Os12g02090OsAffx.31549.2.S1_x_at3/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02090OsAffx.31549.1.S1_x_at2/1112+626213..626638TCP family transcription factor containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51497.1.A1_s_at--363--3672Chr12:598735..598759 (25 bp)
CTTTAGAAGAGAAGCTCGAGCTCCT
LOC_Os12g02020
Os.51497.1.A1_s_at--956--1452Chr12:598739..598763 (25 bp)
AGAAGAGAAGCTCGAGCTCCTACGT
LOC_Os12g02020
Os.51497.1.A1_s_at--495--6952Chr12:599182..599206 (25 bp)
GTAGATGCGTCCAAGTACATCAAAG
LOC_Os12g02020
Os.51497.1.A1_s_at--1008--1292Chr12:599184..599208 (25 bp)
AGATGCGTCCAAGTACATCAAAGAG
LOC_Os12g02020
Os.51497.1.A1_s_at--863--2892Chr12:599218..599242 (25 bp)
AAGGTATCTCAGGAGCCTGAACAGC
LOC_Os12g02020
Os.51497.1.A1_s_at--324--9532Chr12:599224..599248 (25 bp)
TCTCAGGAGCCTGAACAGCTGGGCA
LOC_Os12g02020
Os.51497.1.A1_s_at--557--8092Chr12:599229..599253 (25 bp)
GGAGCCTGAACAGCTGGGCAGCACT
LOC_Os12g02020
Os.51497.1.A1_s_at--835--1612Chr12:599240..599264 (25 bp)
AGCTGGGCAGCACTAGCAGTTCCAT
LOC_Os12g02020
Os.51497.1.A1_s_at--495--5052Chr12:599246..599270 (25 bp)
GCAGCACTAGCAGTTCCATGCCAAT
LOC_Os12g02020
Os.51497.1.A1_s_at--805--1492Chr12:599248..599272 (25 bp)
AGCACTAGCAGTTCCATGCCAATGC
LOC_Os12g02020
Os.51497.1.A1_s_at--1076--10012Chr12:599253..599277 (25 bp)
TAGCAGTTCCATGCCAATGCCAAGA
LOC_Os12g02020
Target Sequence 
CTTTAGAAGAGAAGCTCGAGCTCCTACGTNNTGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTNGTAGATGCG
TCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTTCCATGCCAAT
GCCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51497.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis