Browse Element(s) Details


OsAffx.18633.2.S1_at

Description tigr:9639.m00111
TID=OsAffx.18633.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g020909/11expressed protein
LOC_Os12g020501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02020Os.52045.1.S1_at1/1111+539153..541921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02020Os.52238.1.S1_at1/1111+539153..541921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02030OsAffx.30777.1.S1_at11/1111+543484..544182hypothetical protein
LOC_Os11g02040OsAffx.18632.1.S1_at10/1111+545279..547231hypothetical protein
LOC_Os11g02040OsAffx.22791.3.A1_at1/1111+545279..547231hypothetical protein
LOC_Os11g02054Os.51497.1.A1_s_at11/1111+551471..557822expressed protein
LOC_Os11g02054OsAffx.7458.1.S1_x_at10/1111+551471..557822expressed protein
LOC_Os11g02054Os.18660.1.S1_x_at9/1111+551471..557822expressed protein
LOC_Os11g02070Os.8562.1.S1_x_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.1.S1_a_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.2.S1_x_at4/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02080Os.12584.1.S1_x_at11/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_x_at7/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_at2/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02090OsAffx.18633.1.S1_at11/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.2.S1_at9/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.1.S1_s_at3/1111+565282..567861expressed protein
LOC_Os11g02100Os.55595.1.S1_at11/1111+570322..572021Cationic peroxidase 1 precursor, putative, expressed
LOC_Os11g02110Os.50351.1.S1_s_at11/1111+572572..573727expressed protein
LOC_Os11g02110Os.50351.1.S1_at11/1111+572572..573727expressed protein
LOC_Os11g02120Os.46459.1.S1_at1/1111+578798..580488transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g02130Os.11549.1.S1_at2/1111+582211..584405Peroxidase 52 precursor, putative, expressed
LOC_Os11g02140NANA11+589587..589874hypothetical protein
LOC_Os11g02150Os.14873.1.S1_at10/1111+591079..593754Saposin-like type B, region 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18633.2.S1_at--612--3032Chr12:609519..609543 (25 bp)
AATCCAATCTCTGCGCGCTTCGTTG
LOC_Os12g02050
OsAffx.18633.2.S1_at--388--3831Chr11:565624..565648 (25 bp)
CTGCGCGCTTCGTTGTAGCAATTGG
LOC_Os11g02090
OsAffx.18633.2.S1_at--720--3171Chr11:565643..565667 (25 bp)
AATTGGGATTTTGCTAACGCTCGCC
LOC_Os11g02090
OsAffx.18633.2.S1_at--434--2591Chr11:565658..565682 (25 bp)
AACGCTCGCCATTGCAGCTGCTGAG
LOC_Os11g02090
OsAffx.18633.2.S1_at--227--2011NONE
ACTCTTGCAAGAAAACCTCTATGGC
NONE
OsAffx.18633.2.S1_at--762--2731NONE
AAGAAAACCTCTATGGCTCAGGGTA
NONE
OsAffx.18633.2.S1_at--579--9631Chr11:567744..567768 (25 bp)
TCAGTTTTCTTCAAAGTTACAGGAG
LOC_Os11g02090
OsAffx.18633.2.S1_at--241--2131Chr11:567762..567786 (25 bp)
ACAGGAGTACATAAATTTGCTTCAA
LOC_Os11g02090
OsAffx.18633.2.S1_at--884--10271Chr11:567777..567801 (25 bp)
TTTGCTTCAATCTATGACTGGCATT
LOC_Os11g02090
OsAffx.18633.2.S1_at--188--692Chr12:611523..611547 (25 bp)
ATGACTGGCATTTTACTCGACACCC
NONE
OsAffx.18633.2.S1_at--781--1992Chr12:611537..611561 (25 bp)
ACTCGACACCCTCAGCCTAATTATG
NONE
Target Sequence 
AATCCAATCTCTGCGCGCTTCGTTGTAGCAATTGGGATTTTGCTAACGCTCGCCATTGCAGCTGCTGAGGAGCGTAGCTT
GGTTAAATCGGCCATCTCCACCGTGTATACAAGGCGCAACACCGCCCAGAAGAGGAGAACCAACGACAACACACCATTTC
CTGCCGGAACATCAAGCTGCCCTCCTCCTGCAACTCTTGCAAGAAAACCTCTATGGCTCAGGGTACTCGGCCTATTTCAT
CCTTGGTTCCTTGTCATCGATCTAAAAAGACGAAGAGCACGAGGATGGAGAATACATCTTCAGTTTTCTTCAAAGTTACA
GGAGTACATAAATTTGCTTCAATCTATGACTGGCATTTTACTCGACACCCTCAGCCTAATTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18633.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis