Browse Element(s) Details


OsAffx.30777.1.S1_at

Description tigr:9639.m00105
TID=OsAffx.30777.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0203011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01970Os.46012.2.S1_x_at10/1111+517937..523281retrotransposon protein, putative, unclassified
LOC_Os11g01970Os.46012.3.S1_x_at8/1111+517937..523281retrotransposon protein, putative, unclassified
LOC_Os11g01970Os.27088.1.A1_x_at6/1111+517937..523281retrotransposon protein, putative, unclassified
LOC_Os11g01970Os.54691.1.S1_x_at1/1111+517937..523281retrotransposon protein, putative, unclassified
LOC_Os11g01980NANA11+524467..525275hypothetical protein
LOC_Os11g01990NANA11+530016..531080expressed protein
LOC_Os11g02000Os.57376.1.S1_s_at11/1111+532001..534129expressed protein
LOC_Os11g02010Os.56115.1.S1_at10/1111+536011..537453transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g02020Os.52045.1.S1_at1/1111+539153..541921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02020Os.52238.1.S1_at1/1111+539153..541921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02030OsAffx.30777.1.S1_at11/1111+543484..544182hypothetical protein
LOC_Os11g02040OsAffx.18632.1.S1_at10/1111+545279..547231hypothetical protein
LOC_Os11g02040OsAffx.22791.3.A1_at1/1111+545279..547231hypothetical protein
LOC_Os11g02054Os.51497.1.A1_s_at11/1111+551471..557822expressed protein
LOC_Os11g02054OsAffx.7458.1.S1_x_at10/1111+551471..557822expressed protein
LOC_Os11g02054Os.18660.1.S1_x_at9/1111+551471..557822expressed protein
LOC_Os11g02070Os.8562.1.S1_x_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.1.S1_a_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.2.S1_x_at4/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02080Os.12584.1.S1_x_at11/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_x_at7/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_at2/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02090OsAffx.18633.1.S1_at11/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.2.S1_at9/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.1.S1_s_at3/1111+565282..567861expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30777.1.S1_at--423--5051Chr11:543683..543707 (25 bp)
GCAGCATTACCGGTCGGAGAGAAAA
LOC_Os11g02030
OsAffx.30777.1.S1_at--939--2871Chr11:543719..543743 (25 bp)
AAGGGCTCACCAGCGCACGGGAACA
LOC_Os11g02030
OsAffx.30777.1.S1_at--675--1711Chr11:543727..543751 (25 bp)
ACCAGCGCACGGGAACACGGACGAA
LOC_Os11g02030
OsAffx.30777.1.S1_at--460--3391Chr11:543729..543753 (25 bp)
CAGCGCACGGGAACACGGACGAACG
LOC_Os11g02030
OsAffx.30777.1.S1_at--47--5451Chr11:543749..543773 (25 bp)
GAACGGCAGGTTTTCCGACGACGAG
LOC_Os11g02030
OsAffx.30777.1.S1_at--725--7291Chr11:543810..543834 (25 bp)
GTGCCCGAGGCGACAACGCGGCCGG
LOC_Os11g02030
OsAffx.30777.1.S1_at--879--9371Chr11:543896..543920 (25 bp)
TCGGTGGTGAGGAAGCGGTCCTGAT
LOC_Os11g02030
OsAffx.30777.1.S1_at--531--5411Chr11:543907..543931 (25 bp)
GAAGCGGTCCTGATGGCGATTGGAG
LOC_Os11g02030
OsAffx.30777.1.S1_at--986--7711Chr11:544047..544071 (25 bp)
GGTGGCTCTGCTCCGCGGTGGATGT
LOC_Os11g02030
OsAffx.30777.1.S1_at--780--791Chr11:544068..544092 (25 bp)
ATGTGGTGTTTCGAGCGCGGGAGAC
LOC_Os11g02030
OsAffx.30777.1.S1_at--709--1851Chr11:544091..544115 (25 bp)
ACGACGGCCGAGTGGTGGCCGAGGC
LOC_Os11g02030
Target Sequence 
GCAGCATTACCGGTCGGAGAGAAAAAAGAGAGAGGGAAGGGCTCACCAGCGCACGGGAACACGGACGAACGGCAGGTTTT
CCGACGACGAGGAGGTGGTGGCCGAGGTGCGGGAGAGCACGTCGAACGTGCCCGAGGCGACAACGCGGCCGGGCGAGGTC
CCTCTCACCGGCGAGGAGCGGCTGGAGCACGGTAGAAGATGGTGAAGCTCGGGTCGGTGGTGAGGAAGCGGTCCTGATGG
CGATTGGAGGAGGAGGAGGGGTGGACGGGCTGCGCACGGTGACTGCGGTGCCGAGGAAGGCGACGGCGCAGCGCGAGGTG
GACCGGAGATGCGGCGCGACACGGCTGGAGGCGACAATGGCGACGGTGGCTCTGCTCCGCGGTGGATGTGGTGTTTCGAG
CGCGGGAGACGACGGCCGAGTGGTGGCCGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis