Browse Element(s) Details


Os.56115.1.S1_at

Description gb:AK109277.1
DB_XREF= gi:32994486
TID=Os.56115.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-B01, full insert sequence.
FL= gb:AK109277.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0201010/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01950OsAffx.30775.1.S1_at11/1111+512297..512948hypothetical protein
LOC_Os11g01960Os.38751.1.A1_at10/1111+513988..515571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g01960OsAffx.8338.1.S1_x_at1/1111+513988..515571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g01960OsAffx.916.1.S1_x_at1/1111+513988..515571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g01970Os.46012.2.S1_x_at10/1111+517937..523281retrotransposon protein, putative, unclassified
LOC_Os11g01970Os.46012.3.S1_x_at8/1111+517937..523281retrotransposon protein, putative, unclassified
LOC_Os11g01970Os.27088.1.A1_x_at6/1111+517937..523281retrotransposon protein, putative, unclassified
LOC_Os11g01970Os.54691.1.S1_x_at1/1111+517937..523281retrotransposon protein, putative, unclassified
LOC_Os11g01980NANA11+524467..525275hypothetical protein
LOC_Os11g01990NANA11+530016..531080expressed protein
LOC_Os11g02000Os.57376.1.S1_s_at11/1111+532001..534129expressed protein
LOC_Os11g02010Os.56115.1.S1_at10/1111+536011..537453transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g02020Os.52045.1.S1_at1/1111+539153..541921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02020Os.52238.1.S1_at1/1111+539153..541921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02030OsAffx.30777.1.S1_at11/1111+543484..544182hypothetical protein
LOC_Os11g02040OsAffx.18632.1.S1_at10/1111+545279..547231hypothetical protein
LOC_Os11g02040OsAffx.22791.3.A1_at1/1111+545279..547231hypothetical protein
LOC_Os11g02054Os.51497.1.A1_s_at11/1111+551471..557822expressed protein
LOC_Os11g02054OsAffx.7458.1.S1_x_at10/1111+551471..557822expressed protein
LOC_Os11g02054Os.18660.1.S1_x_at9/1111+551471..557822expressed protein
LOC_Os11g02070Os.8562.1.S1_x_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.1.S1_a_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.2.S1_x_at4/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02080Os.12584.1.S1_x_at11/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_x_at7/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_at2/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56115.1.S1_at--285--5731Chr11:536384..536408 (25 bp)
GACTGCGACTACTACACCGATACCG
LOC_Os11g02010
Os.56115.1.S1_at--748--1771Chr11:536369..536393 (25 bp)
ACCGATACCGACATGGGTCTGGGTC
LOC_Os11g02010
Os.56115.1.S1_at--1061--3971Chr11:536322..536346 (25 bp)
CGGGAGTGGCCGTCCTAGCGATCAA
LOC_Os11g02010
Os.56115.1.S1_at--986--9991Chr11:536307..536331 (25 bp)
TAGCGATCAAGCTCGCCTACGACTA
LOC_Os11g02010
Os.56115.1.S1_at--945--1951Chr11:536262..536286 (25 bp)
ACTGATCGATCCCATGCAGGCCCAG
LOC_Os11g02010
Os.56115.1.S1_at--638--1131Chr11:536153..536177 (25 bp)
AGTGCGTGAGTCAATCGTCTCCATT
LOC_Os11g02010
Os.56115.1.S1_at--1096--4671Chr11:536104..536128 (25 bp)
GCGGTTTTCTTCTCTGATTAGGACA
LOC_Os11g02010
Os.56115.1.S1_at--1075--771Chr11:536067..536091 (25 bp)
ATGTGCTGTGACGACATGCATGTCC
LOC_Os11g02010
Os.56115.1.S1_at--249--5671Chr11:536055..536079 (25 bp)
GACATGCATGTCCTACTACTTTGTG
LOC_Os11g02010
Os.56115.1.S1_at--217--4291Chr11:536044..536068 (25 bp)
CCTACTACTTTGTGTGGTTCGGCTT
LOC_Os11g02010
Os.56115.1.S1_at--538--431Chr11:536011..536035 (25 bp)
ATCTTTGAAGACATTTTCAGCGCCG
NONE
Target Sequence 
GACTGCGACTACTACACCGATACCGACATGGGTCTGGGTCGGCGGCGTGCTGGTCCTCAGTGCGGGAGTGGCCGTCCTAG
CGATCAAGCTCGCCTACGACTACCTAGGCGGCGGCCGCAACGACTGATCGATCCCATGCAGGCCCAGCCAGCATCGTCAA
CCTGGCCGCTGCGGTCGCCCTCGCCTCCGGCTCCAAACAGATCGCCTCCGCCGCCGCTTACGGCGAAAGACAGTGCGTGA
GTCAATCGTCTCCATTTTTTTCACCCCTGCTGCTGCGGCTGCGGTTTTCTTCTCTGATTAGGACAGGATGATGAGTAATG
TGCTGTGACGACATGCATGTCCTACTACTTTGTGTGGTTCGGCTTGAAATGAAATCTTTGAAGACATTTTCAGCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis