Browse Element(s) Details


Os.12584.1.S1_x_at

Description gb:CF327155
DB_XREF= gi:33802565
DB_XREF=NACL--01-I10.g1
CLONE=NACL--01-I10
TID=Os.12584.1
CNT=73
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.12584 (NCBI UniGene Cluster)
UG_TITLE=Aie2 mRNA, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0208011/11Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g020409/11Hypoxia induced protein conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02010Os.56115.1.S1_at10/1111+536011..537453transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g02020Os.52045.1.S1_at1/1111+539153..541921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02020Os.52238.1.S1_at1/1111+539153..541921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02030OsAffx.30777.1.S1_at11/1111+543484..544182hypothetical protein
LOC_Os11g02040OsAffx.18632.1.S1_at10/1111+545279..547231hypothetical protein
LOC_Os11g02040OsAffx.22791.3.A1_at1/1111+545279..547231hypothetical protein
LOC_Os11g02054Os.51497.1.A1_s_at11/1111+551471..557822expressed protein
LOC_Os11g02054OsAffx.7458.1.S1_x_at10/1111+551471..557822expressed protein
LOC_Os11g02054Os.18660.1.S1_x_at9/1111+551471..557822expressed protein
LOC_Os11g02070Os.8562.1.S1_x_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.1.S1_a_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.2.S1_x_at4/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02080Os.12584.1.S1_x_at11/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_x_at7/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_at2/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02090OsAffx.18633.1.S1_at11/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.2.S1_at9/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.1.S1_s_at3/1111+565282..567861expressed protein
LOC_Os11g02100Os.55595.1.S1_at11/1111+570322..572021Cationic peroxidase 1 precursor, putative, expressed
LOC_Os11g02110Os.50351.1.S1_s_at11/1111+572572..573727expressed protein
LOC_Os11g02110Os.50351.1.S1_at11/1111+572572..573727expressed protein
LOC_Os11g02120Os.46459.1.S1_at1/1111+578798..580488transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g02130Os.11549.1.S1_at2/1111+582211..584405Peroxidase 52 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12584.1.S1_x_at--951--8551Chr11:562862..562886 (25 bp)
TGGAGGAACACAAGCTGGCCAGCAT
LOC_Os11g02080
Os.12584.1.S1_x_at--705--2211Chr11:562753..562877 (25 bp)
ACAAGCTGGCCAGCATCGGAGGGCT
LOC_Os11g02080
Os.12584.1.S1_x_at--1042--1292Chr12:606895..606919 (25 bp)
AGATGCGGCTGATCCACGCCAGGCT
LOC_Os12g02040
Os.12584.1.S1_x_at--280--1512Chr12:606785..606809 (25 bp)
AGCAGCAGCTTGGACTACGACTTCT
LOC_Os12g02040
Os.12584.1.S1_x_at--1015--8112Chr12:606774..606798 (25 bp)
GGACTACGACTTCTACTCGCAGCTG
LOC_Os12g02040
Os.12584.1.S1_x_at--44--8092Chr12:606709..606733 (25 bp)
GGAGCTGGTAGTGCTACCCTTCCTT
LOC_Os12g02040
Os.12584.1.S1_x_at--985--3632Chr12:606691..606715 (25 bp)
CTTCCTTCCTGCTGCAAGATGCAGA
LOC_Os12g02040
Os.12584.1.S1_x_at--871--3052Chr12:606611..606645 (25 bp)
AATCGGCTCCATTAGTTTTATCTTA
LOC_Os12g02040
Os.12584.1.S1_x_at--550--352Chr12:606591..606610 (20 bp)
ATAATAGAGTATGTCCTCCTCCTAA
LOC_Os12g02040
Os.12584.1.S1_x_at--185--572Chr12:606561..606908 (25 bp)
ATCCACCTAGGATGGTCTTATCCAC
LOC_Os12g02040
Os.12584.1.S1_x_at--650--4812Chr12:606517..606545 (25 bp)
GCTCTGTACTATGTAATTATCCATT
LOC_Os12g02040
Target Sequence 
TGGAGGAACACAAGCTGGCCAGCATCGGAGGGCTGTGGGCGACGGCGGTGGGCGCATCGGTGGCGTACGGGCGGAGGAAG
ACGCCGCAGATGCGGCTGATCCACGCCAGGCTTCACGCGCAGGCCCTCACCCTCGCCGTCCTCGGTGGAGCCGCCCTTGC
GCACCACTACTACAACCCATCATCCAACACCAACAACAGCAGCAGCTTGGACTACGACTTCTACTCGCAGCTGCCGCCGG
CCACCACCGACGACGGCCAGGAGAACGAGAGGTGGAGCTGGTAGTGCTACCCTTCCTTCCTGCTGCAAGATGCAGACAAA
TGAAGATGATGACGATCACGATGATCAATTAGTAATAATCTAATCGGCTCCATTAGTTTTATCTTATCTTAATAATAGAG
TATGTCCTCCTCCTAATCCATCCACCTAGGATGGTCTTATCCACTCCAACCCATCCTCTGCTCTGTACTATGTAATTATC
CATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12584.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis