Browse Element(s) Details


Os.18660.1.S1_x_at

Description gb:AU031410
DB_XREF= gi:3767300
DB_XREF=AU031410
CLONE=E61517_4Z
TID=Os.18660.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18660 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565932.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g020549/11expressed protein
LOC_Os12g020201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01990NANA11+530016..531080expressed protein
LOC_Os11g02000Os.57376.1.S1_s_at11/1111+532001..534129expressed protein
LOC_Os11g02010Os.56115.1.S1_at10/1111+536011..537453transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g02020Os.52045.1.S1_at1/1111+539153..541921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02020Os.52238.1.S1_at1/1111+539153..541921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02030OsAffx.30777.1.S1_at11/1111+543484..544182hypothetical protein
LOC_Os11g02040OsAffx.18632.1.S1_at10/1111+545279..547231hypothetical protein
LOC_Os11g02040OsAffx.22791.3.A1_at1/1111+545279..547231hypothetical protein
LOC_Os11g02054Os.51497.1.A1_s_at11/1111+551471..557822expressed protein
LOC_Os11g02054OsAffx.7458.1.S1_x_at10/1111+551471..557822expressed protein
LOC_Os11g02054Os.18660.1.S1_x_at9/1111+551471..557822expressed protein
LOC_Os11g02070Os.8562.1.S1_x_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.1.S1_a_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.2.S1_x_at4/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02080Os.12584.1.S1_x_at11/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_x_at7/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_at2/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02090OsAffx.18633.1.S1_at11/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.2.S1_at9/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.1.S1_s_at3/1111+565282..567861expressed protein
LOC_Os11g02100Os.55595.1.S1_at11/1111+570322..572021Cationic peroxidase 1 precursor, putative, expressed
LOC_Os11g02110Os.50351.1.S1_s_at11/1111+572572..573727expressed protein
LOC_Os11g02110Os.50351.1.S1_at11/1111+572572..573727expressed protein
LOC_Os11g02120Os.46459.1.S1_at1/1111+578798..580488transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g02130Os.11549.1.S1_at2/1111+582211..584405Peroxidase 52 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18660.1.S1_x_at--221--9211NONE
TGCCAAGAGTCAGTGTTTCATCGGT
NONE
Os.18660.1.S1_x_at--542--4391NONE
GCCAAGAGTCAGTGTTTCATCGGTA
NONE
Os.18660.1.S1_x_at--855--7111Chr11:557212..557236 (25 bp)
GTCAGTGTTTCATCGGTAGAGCTAG
LOC_Os11g02054
Os.18660.1.S1_x_at--831--271Chr11:557245..557269 (25 bp)
ATAGGTTTTCGAATCAATGTGTCAA
LOC_Os11g02054
Os.18660.1.S1_x_at--50--3211Chr11:557267..557291 (25 bp)
CAATGGAGAAGAGTCAGCCTGAGTT
LOC_Os11g02054
Os.18660.1.S1_x_at--961--4451Chr11:557283..557307 (25 bp)
GCCTGAGTTGCTGACGTCGGTGTTA
LOC_Os11g02054
Os.18660.1.S1_x_at--420--10452Chr12:600775..600798 (24 bp)
TTAGAAGCATTCGAGGAGCTTGGCC
LOC_Os12g02020
Os.18660.1.S1_x_at--75--5791Chr11:557362..557386 (25 bp)
GACGACACCGCTTTTCGTCTTGAAG
LOC_Os11g02054
Os.18660.1.S1_x_at--85--8991Chr11:557382..557403 (22 bp)
TGAAGCGCTTGGATCCAGCCAAAGT
LOC_Os11g02054
Os.18660.1.S1_x_at--417--5691Chr11:557674..557698 (25 bp)
GACTTAAATTCTCATCTGCCGTAGC
LOC_Os11g02054
Os.18660.1.S1_x_at--323--2451Chr11:557755..557779 (25 bp)
AAAATTAGCTATCTTTTGGTGCTGA
LOC_Os11g02054
Target Sequence 
TGCCAAGAGTCAGTGTTTCATCGGTAGAGCTAGAGAAGAAGATAGGTTTTCGAATCAATGTGTCAATGGAGAAGAGTCAG
CCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCGAGGAGCTTGGCCTCGACGTCCTTGATGCTNACGTGTCGTGCGCAGA
CGACACCGCTTTTCGTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAATGGTTC
GTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGATCCAGAATGAATTTTATGTTTCGACTT
AAATTCTCATCTGCCGTAGCGCAAACTTATTGTGATGATACTAAATATATCTATATTTTCAGNTAATTTTGNTGTAAAAA
TTAGCTATCTTTTGGTGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18660.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis