Browse Element(s) Details


Os.52045.1.S1_at

Description gb:AK064603.1
DB_XREF= gi:32974621
TID=Os.52045.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52045 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-H12, full insert sequence.
FL= gb:AK064603.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0200011/11expressed protein
LOC_Os11g020201/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01940Os.16743.3.S1_x_at7/1112+558283..561829expressed protein
LOC_Os12g01940Os.16743.3.S1_at6/1112+558283..561829expressed protein
LOC_Os12g01950Os.9846.1.S1_x_at7/1112+561988..564691expressed protein
LOC_Os12g01950Os.9846.2.S1_at1/1112+561988..564691expressed protein
LOC_Os12g01950OsAffx.9909.2.S1_x_at1/1112+561988..564691expressed protein
LOC_Os12g01950OsAffx.9909.1.S1_at1/1112+561988..564691expressed protein
LOC_Os12g01960OsAffx.31546.2.S1_at11/1112+567945..569943expressed protein
LOC_Os12g01970OsAffx.19451.2.S1_s_at11/1112+576960..578223hypothetical protein
LOC_Os12g01970OsAffx.19451.3.S1_x_at1/1112+576960..578223hypothetical protein
LOC_Os12g01980OsAffx.31547.1.S1_at11/1112+578828..579954hypothetical protein
LOC_Os12g01990OsAffx.31548.1.S1_at11/1112+580870..582002hypothetical protein
LOC_Os12g01990OsAffx.31548.1.S1_x_at10/1112+580870..582002hypothetical protein
LOC_Os12g02000Os.52045.1.S1_at11/1112+582904..584609expressed protein
LOC_Os12g02000Os.51572.1.S1_x_at1/1112+582904..584609expressed protein
LOC_Os12g02010OsAffx.22759.1.S1_at8/1112+591045..593348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g02020Os.51497.1.A1_s_at11/1112+598639..601697expressed protein
LOC_Os12g02020OsAffx.7458.1.S1_x_at10/1112+598639..601697expressed protein
LOC_Os12g02020Os.18660.1.S1_x_at1/1112+598639..601697expressed protein
LOC_Os12g02030Os.8562.1.S1_a_at11/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02030Os.8562.2.S1_x_at10/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02030Os.8562.1.S1_x_at4/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02040Os.46087.1.S1_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.12584.1.S1_x_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_x_at7/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_at3/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02050OsAffx.18633.1.S1_at11/1112+609165..611432expressed protein
LOC_Os12g02050OsAffx.18633.1.S1_s_at11/1112+609165..611432expressed protein
LOC_Os12g02050OsAffx.18633.2.S1_at1/1112+609165..611432expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52045.1.S1_at--1072--3271Chr12:584069..584093 (25 bp)
CACGCGTTACTTGGGCTACTACGAC
LOC_Os12g02000
Os.52045.1.S1_at--92--4151Chr12:584210..584234 (25 bp)
CGCGTTCAGGGTGCTTGGAATCGCT
LOC_Os12g02000
Os.52045.1.S1_at--180--6711Chr12:584256..584280 (25 bp)
GTTCGTCGCTGCAGTGCAGATCGTA
LOC_Os12g02000
Os.52045.1.S1_at--1047--7031Chr12:584278..584302 (25 bp)
GTACAATGCGGACGACTATCCGGCC
LOC_Os12g02000
Os.52045.1.S1_at--177--1231Chr12:584332..584356 (25 bp)
AGTTCTTTGCCGGAGCAAGTCCCGT
LOC_Os12g02000
Os.52045.1.S1_at--641--4891Chr12:584379..584403 (25 bp)
GCTTCTACCCCGTTATGTTAGTTTG
LOC_Os12g02000
Os.52045.1.S1_at--3--8791Chr12:584394..584418 (25 bp)
TGTTAGTTTGATCGATCGTCCCGTC
LOC_Os12g02000
Os.52045.1.S1_at--1122--7831Chr12:584421..584445 (25 bp)
GGTACAGGTATTCTTGCTGTCAATT
LOC_Os12g02000
Os.52045.1.S1_at--162--9651Chr12:584487..584511 (25 bp)
TCAGTCCTCTTGCTGCCAAGGATAA
LOC_Os12g02000
Os.52045.1.S1_at--1043--6451Chr12:584507..584531 (25 bp)
GATAATGCAGTTACAGTTTCAGTCA
LOC_Os12g02000
Os.52045.1.S1_at--709--3052Chr12:584546..584570 (25 bp)
AATCGTGGATTGGTACAGTTGCTAC
LOC_Os12g02000
Target Sequence 
CACGCGTTACTTGGGCTACTACGACGGTGGCTGGGTCTTCATCTCCTTGGGCCACACGACGCGCTCCTCAGTCTCCACAA
CCTTCGCCGCCATCAACCACTCTGCACCCATGTCCTCCCCTATCCGCCGAAGACGTCCGCGCGCGTTCAGGGTGCTTGGA
ATCGCTGGGTGGGCGGATGCTGTTCCTGTTCGTCGCTGCAGTGCAGATCGTACAATGCGGACGACTATCCGGCCGCCGAC
TTCAACGTGGTTGCCAGCGGCCAAGTTCTTTGCCGGAGCAAGTCCCGTCGAACTACTCACCGCCGGCGTGGCTTCTACCC
CGTTATGTTAGTTTGATCGATCGTCCCGTCCTGGTACAGGTATTCTTGCTGTCAATTTGTTCAAGATTTGCTTCAAGATT
GCAATTGCAGTTTCAGTTTCAGTCCTCTTGCTGCCAAGGATAATGCAGTTACAGTTTCAGTCAAAATTTGATGTCATAAT
CGTGGATTGGTACAGTTGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis