Browse Element(s) Details


OsAffx.18633.1.S1_s_at

Description tigr:9640.m00107
TID=OsAffx.18633.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0205011/11expressed protein
LOC_Os11g020903/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02000Os.52045.1.S1_at11/1112+582904..584609expressed protein
LOC_Os12g02000Os.51572.1.S1_x_at1/1112+582904..584609expressed protein
LOC_Os12g02010OsAffx.22759.1.S1_at8/1112+591045..593348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g02020Os.51497.1.A1_s_at11/1112+598639..601697expressed protein
LOC_Os12g02020OsAffx.7458.1.S1_x_at10/1112+598639..601697expressed protein
LOC_Os12g02020Os.18660.1.S1_x_at1/1112+598639..601697expressed protein
LOC_Os12g02030Os.8562.1.S1_a_at11/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02030Os.8562.2.S1_x_at10/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02030Os.8562.1.S1_x_at4/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02040Os.46087.1.S1_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.12584.1.S1_x_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_x_at7/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_at3/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02050OsAffx.18633.1.S1_at11/1112+609165..611432expressed protein
LOC_Os12g02050OsAffx.18633.1.S1_s_at11/1112+609165..611432expressed protein
LOC_Os12g02050OsAffx.18633.2.S1_at1/1112+609165..611432expressed protein
LOC_Os12g02060Os.55595.1.S1_at5/1112+613316..614845Cationic peroxidase 1 precursor, putative, expressed
LOC_Os12g02070Os.50351.1.S1_s_at3/1112+615651..616635expressed protein
LOC_Os12g02070Os.50351.1.S1_at1/1112+615651..616635expressed protein
LOC_Os12g02080Os.11549.1.S1_at11/1112+622582..625113Peroxidase 52 precursor, putative, expressed
LOC_Os12g02090OsAffx.31549.2.S1_x_at3/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02090OsAffx.31549.1.S1_x_at2/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02100Os.39076.1.A1_s_at11/1112+631454..637030expressed protein
LOC_Os12g02100Os.52675.1.S1_at11/1112+631454..637030expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18633.1.S1_s_at--23--4291Chr12:609704..609728 (25 bp)
CCTCCTGCAACTCTCGCAAGTAAAA
LOC_Os12g02050
OsAffx.18633.1.S1_s_at--1125--2411Chr12:610353..610372 (20 bp)
AAAACAGCAAAACCTCTGAGGCTCA
LOC_Os12g02050
OsAffx.18633.1.S1_s_at--462--412Chr12:611140..611164 (25 bp)
ATCAGTGTATCGGTGCAGCTAGCTT
LOC_Os12g02050
OsAffx.18633.1.S1_s_at--255--5232Chr12:611179..611203 (25 bp)
GAATATGTGACTACCCTACCTGTAC
LOC_Os12g02050
OsAffx.18633.1.S1_s_at--992--9952Chr12:611195..611219 (25 bp)
TACCTGTACAGAAGCACGCTCGCAT
LOC_Os12g02050
OsAffx.18633.1.S1_s_at--910--5091Chr12:611208..611232 (25 bp)
GCACGCTCGCATAGTTTTACGACAA
LOC_Os12g02050
OsAffx.18633.1.S1_s_at--798--6851Chr12:611248..611272 (25 bp)
GTATAACCCGTGTACCGTAATCATC
LOC_Os12g02050
OsAffx.18633.1.S1_s_at--382--7072Chr12:611264..611288 (25 bp)
GTAATCATCACCAGTCAAAGCCCTA
LOC_Os12g02050
OsAffx.18633.1.S1_s_at--957--2351Chr12:611280..611304 (25 bp)
AAAGCCCTACTGACGTTGGCTTTGT
LOC_Os12g02050
OsAffx.18633.1.S1_s_at--1084--4871Chr12:611298..611322 (25 bp)
GCTTTGTCTTCTGCTTGTAGTTGTA
LOC_Os12g02050
OsAffx.18633.1.S1_s_at--682--131Chr12:611342..611366 (25 bp)
ATTAAGATGAGACCGGTGCTTTCCC
LOC_Os12g02050
Target Sequence 
CCTCCTGCAACTCTCGCAAGTAAAAACAGCAAAACCTCTGAGGCTCAGGGTACTCGGCCTATTTCATCCTCGGCTCCTTG
TCATCGATCTAAAAAGACGAAGAGCACGAGGATGGAGAATACATCTTCAGGTAAACATATGCTACCAGAAGATTTTGTCA
AGAAGCAGAGAGCCTACTTTGAGGAGGTTGATGCCTTTGAGCTGCCAGAGGAGGAGGCCTCAGAGACGGACCTGGAGTGA
AGACTCAGTTAAATCAGTGTATCGGTGCAGCTAGCTTGTAAGAAATTACTAGAATATGTGACTACCCTACCTGTACAGAA
GCACGCTCGCATAGTTTTACGACAATGTAACTGCGAGTTAGTATAACCCGTGTACCGTAATCATCACCAGTCAAAGCCCT
ACTGACGTTGGCTTTGTCTTCTGCTTGTAGTTGTACAATATCAAGTACTTAGATATTAAGATGAGACCGGTGCTTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18633.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis