Browse Element(s) Details


Os.8562.1.S1_x_at

Description gb:AK061535.1
DB_XREF= gi:32971553
TID=Os.8562.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8562 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-F06, full insert sequence.
FL= gb:AK061535.1 gb:AK104218.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0207011/11BTB/POZ domain containing protein, expressed
LOC_Os12g020304/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02000Os.57376.1.S1_s_at11/1111+532001..534129expressed protein
LOC_Os11g02010Os.56115.1.S1_at10/1111+536011..537453transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g02020Os.52045.1.S1_at1/1111+539153..541921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02020Os.52238.1.S1_at1/1111+539153..541921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02030OsAffx.30777.1.S1_at11/1111+543484..544182hypothetical protein
LOC_Os11g02040OsAffx.18632.1.S1_at10/1111+545279..547231hypothetical protein
LOC_Os11g02040OsAffx.22791.3.A1_at1/1111+545279..547231hypothetical protein
LOC_Os11g02054Os.51497.1.A1_s_at11/1111+551471..557822expressed protein
LOC_Os11g02054OsAffx.7458.1.S1_x_at10/1111+551471..557822expressed protein
LOC_Os11g02054Os.18660.1.S1_x_at9/1111+551471..557822expressed protein
LOC_Os11g02070Os.8562.1.S1_x_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.1.S1_a_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.2.S1_x_at4/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02080Os.12584.1.S1_x_at11/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_x_at7/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_at2/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02090OsAffx.18633.1.S1_at11/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.2.S1_at9/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.1.S1_s_at3/1111+565282..567861expressed protein
LOC_Os11g02100Os.55595.1.S1_at11/1111+570322..572021Cationic peroxidase 1 precursor, putative, expressed
LOC_Os11g02110Os.50351.1.S1_s_at11/1111+572572..573727expressed protein
LOC_Os11g02110Os.50351.1.S1_at11/1111+572572..573727expressed protein
LOC_Os11g02120Os.46459.1.S1_at1/1111+578798..580488transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g02130Os.11549.1.S1_at2/1111+582211..584405Peroxidase 52 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8562.1.S1_x_at--726--1031Chr11:558383..558407 (25 bp)
AGGTCGGAGGTGTTCCGGCACATCC
LOC_Os11g02070
Os.8562.1.S1_x_at--1160--8692Chr12:602160..602184 (25 bp)
TGTCGCTACCGGAGCTGACCCACGA
LOC_Os12g02030
Os.8562.1.S1_x_at--44--4592Chr12:602046..602070 (25 bp)
GCGACAAGTACGACGTGCCGTTCCT
LOC_Os12g02030
Os.8562.1.S1_x_at--115--9512Chr12:601875..601899 (25 bp)
TCTCGCCGGAGTACGAGGAGTTCGC
LOC_Os12g02030
Os.8562.1.S1_x_at--900--973Chr06:17822103..17822151 (25 bp)
AGGAGTTCGCCGTCAGGAACGCCGC
NONE
Os.8562.1.S1_x_at--710--10531Chr11:557965..557989 (25 bp)
TTCTCGCCAATAAAAGCTTACCCGC
LOC_Os11g02070
Os.8562.1.S1_x_at--669--3171Chr11:557958..557982 (25 bp)
CAATAAAAGCTTACCCGCCAAGACG
LOC_Os11g02070
Os.8562.1.S1_x_at--665--4391Chr11:557942..557966 (25 bp)
GCCAAGACGCCTTAATATTCTTTTT
LOC_Os11g02070
Os.8562.1.S1_x_at--65--10291Chr11:557916..557940 (25 bp)
TTTCCTTCGTTGATTTAGAATTTAG
LOC_Os11g02070
Os.8562.1.S1_x_at--801--1851Chr11:557887..557911 (25 bp)
ACGACGTGCGATGTATACGTGTAAA
LOC_Os11g02070
Os.8562.1.S1_x_at--930--631Chr11:557853..557877 (25 bp)
ATGCATCTCTGGAAGATTAATGTGA
LOC_Os11g02070
Target Sequence 
AGGTCGGAGGTGTTCCGGCACATCCTCGCCGGCGACGACGACTGCAAGGCCCCCGCCGGCGACTCTCTGTCGCTACCGGA
GCTGACCCACGACGAGCTCTCCCACCTCCTCGCCTTCCTCTACACGGGCTCCCTGGCGACGTGCGCGGAGGAGCGGCACC
TGCACGCGCTGCTGGTCGCCGGCGACAAGTACGACGTGCCGTTCCTCCGGCGAGCTTGCGAGGCGCGGCTGGCGGCGGGG
GTGGAGGCGGGCAACGTGCTGCGGACGCTGGAGGTGGCGGAGCTGAGCTCGAGCGCGGCGCTGAAGGAGCGCGCCATGGG
GACGGTGGTGGAGCACGCGGAGGAGGTGGTGTTCTCGCCGGAGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTCTGCG
TCCAGATCACCCGCACACTTCTCGCCAATAAAAGCTTACCCGCCAAGACGCCTTAATATTCTTTTTTTTTCCTTCGTTGA
TTTAGAATTTAGTTAGACGACGTGCGATGTATACGTGTAAATGANAGTACATGCATCTCTGGAAGATTAATGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8562.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis