Browse Element(s) Details


OsAffx.18633.1.S1_at

Description tigr:9640.m00107
TID=OsAffx.18633.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0209011/11expressed protein
LOC_Os12g0205011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02020Os.52045.1.S1_at1/1111+539153..541921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02020Os.52238.1.S1_at1/1111+539153..541921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02030OsAffx.30777.1.S1_at11/1111+543484..544182hypothetical protein
LOC_Os11g02040OsAffx.18632.1.S1_at10/1111+545279..547231hypothetical protein
LOC_Os11g02040OsAffx.22791.3.A1_at1/1111+545279..547231hypothetical protein
LOC_Os11g02054Os.51497.1.A1_s_at11/1111+551471..557822expressed protein
LOC_Os11g02054OsAffx.7458.1.S1_x_at10/1111+551471..557822expressed protein
LOC_Os11g02054Os.18660.1.S1_x_at9/1111+551471..557822expressed protein
LOC_Os11g02070Os.8562.1.S1_x_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.1.S1_a_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.2.S1_x_at4/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02080Os.12584.1.S1_x_at11/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_x_at7/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_at2/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02090OsAffx.18633.1.S1_at11/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.2.S1_at9/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.1.S1_s_at3/1111+565282..567861expressed protein
LOC_Os11g02100Os.55595.1.S1_at11/1111+570322..572021Cationic peroxidase 1 precursor, putative, expressed
LOC_Os11g02110Os.50351.1.S1_s_at11/1111+572572..573727expressed protein
LOC_Os11g02110Os.50351.1.S1_at11/1111+572572..573727expressed protein
LOC_Os11g02120Os.46459.1.S1_at1/1111+578798..580488transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g02130Os.11549.1.S1_at2/1111+582211..584405Peroxidase 52 precursor, putative, expressed
LOC_Os11g02140NANA11+589587..589874hypothetical protein
LOC_Os11g02150Os.14873.1.S1_at10/1111+591079..593754Saposin-like type B, region 1 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18633.1.S1_at--1102--7072Chr12:611044..611068 (25 bp)
GTCAAGAAGCAGAGAGCCTACTTTG
LOC_Os12g02050
OsAffx.18633.1.S1_at--345--2452Chr12:611047..611071 (25 bp)
AAGAAGCAGAGAGCCTACTTTGAGG
LOC_Os12g02050
OsAffx.18633.1.S1_at--1134--1512Chr12:611051..611075 (25 bp)
AGCAGAGAGCCTACTTTGAGGAGGT
LOC_Os12g02050
OsAffx.18633.1.S1_at--42--3432Chr12:611053..611077 (25 bp)
CAGAGAGCCTACTTTGAGGAGGTTG
LOC_Os12g02050
OsAffx.18633.1.S1_at--320--3432Chr12:611108..611132 (25 bp)
CAGAGACGGACCTGGAGTGAAGACT
LOC_Os12g02050
OsAffx.18633.1.S1_at--140--5992Chr12:611110..611134 (25 bp)
GAGACGGACCTGGAGTGAAGACTCA
LOC_Os12g02050
OsAffx.18633.1.S1_at--374--5752Chr12:611112..611136 (25 bp)
GACGGACCTGGAGTGAAGACTCAGT
LOC_Os12g02050
OsAffx.18633.1.S1_at--288--3952Chr12:611114..611138 (25 bp)
CGGACCTGGAGTGAAGACTCAGTTA
LOC_Os12g02050
OsAffx.18633.1.S1_at--2--5832Chr12:611116..611140 (25 bp)
GACCTGGAGTGAAGACTCAGTTAAA
LOC_Os12g02050
OsAffx.18633.1.S1_at--597--7712Chr12:611121..611145 (25 bp)
GGAGTGAAGACTCAGTTAAATCAGT
LOC_Os12g02050
OsAffx.18633.1.S1_at--290--7352Chr12:611124..611148 (25 bp)
GTGAAGACTCAGTTAAATCAGTGTA
LOC_Os12g02050
Target Sequence 
GTCAAGAAGCAGAGAGCCTACTTTGAGGAGGTTGATGCCTTTGAGCTGCCAGAGGAGGAGGCCTCAGAGACGGACCTGGA
GTGAAGACTCAGTTAAATCAGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis