Browse Element(s) Details


OsAffx.7458.1.S1_x_at

Description tigr:9640.m00104
TID=OsAffx.7458.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0202010/11expressed protein
LOC_Os11g0205410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01970OsAffx.19451.2.S1_s_at11/1112+576960..578223hypothetical protein
LOC_Os12g01970OsAffx.19451.3.S1_x_at1/1112+576960..578223hypothetical protein
LOC_Os12g01980OsAffx.31547.1.S1_at11/1112+578828..579954hypothetical protein
LOC_Os12g01990OsAffx.31548.1.S1_at11/1112+580870..582002hypothetical protein
LOC_Os12g01990OsAffx.31548.1.S1_x_at10/1112+580870..582002hypothetical protein
LOC_Os12g02000Os.52045.1.S1_at11/1112+582904..584609expressed protein
LOC_Os12g02000Os.51572.1.S1_x_at1/1112+582904..584609expressed protein
LOC_Os12g02010OsAffx.22759.1.S1_at8/1112+591045..593348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g02020Os.51497.1.A1_s_at11/1112+598639..601697expressed protein
LOC_Os12g02020OsAffx.7458.1.S1_x_at10/1112+598639..601697expressed protein
LOC_Os12g02020Os.18660.1.S1_x_at1/1112+598639..601697expressed protein
LOC_Os12g02030Os.8562.1.S1_a_at11/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02030Os.8562.2.S1_x_at10/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02030Os.8562.1.S1_x_at4/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02040Os.46087.1.S1_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.12584.1.S1_x_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_x_at7/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_at3/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02050OsAffx.18633.1.S1_at11/1112+609165..611432expressed protein
LOC_Os12g02050OsAffx.18633.1.S1_s_at11/1112+609165..611432expressed protein
LOC_Os12g02050OsAffx.18633.2.S1_at1/1112+609165..611432expressed protein
LOC_Os12g02060Os.55595.1.S1_at5/1112+613316..614845Cationic peroxidase 1 precursor, putative, expressed
LOC_Os12g02070Os.50351.1.S1_s_at3/1112+615651..616635expressed protein
LOC_Os12g02070Os.50351.1.S1_at1/1112+615651..616635expressed protein
LOC_Os12g02080Os.11549.1.S1_at11/1112+622582..625113Peroxidase 52 precursor, putative, expressed
LOC_Os12g02090OsAffx.31549.2.S1_x_at3/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02090OsAffx.31549.1.S1_x_at2/1112+626213..626638TCP family transcription factor containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7458.1.S1_x_at--381--5352Chr12:598740..598764 (25 bp)
GAAGAGAAGCTCGAGCTCCTACGTT
LOC_Os12g02020
OsAffx.7458.1.S1_x_at--1002--3852Chr12:598765..598785 (21 bp)
CTGTTACAAAGTCAAGTGCGGCAAA
LOC_Os12g02020
OsAffx.7458.1.S1_x_at--200--7292Chr12:599160..599180 (21 bp)
GTGCGGCAAACGAGACATCAATCCT
LOC_Os12g02020
OsAffx.7458.1.S1_x_at--317--371Chr12:599172..599196 (25 bp)
ATCAATCCTCGTAGATGCGTCCAAG
LOC_Os12g02020
OsAffx.7458.1.S1_x_at--494--6952Chr12:599182..599206 (25 bp)
GTAGATGCGTCCAAGTACATCAAAG
LOC_Os12g02020
OsAffx.7458.1.S1_x_at--84--1112Chr12:600684..600708 (25 bp)
AGTGTTTCATCGGTAGAGCTAGAGA
LOC_Os12g02020
OsAffx.7458.1.S1_x_at--270--8552Chr12:600739..600763 (25 bp)
TGGAGAAGAGTCAGCCTGAGTTGCT
LOC_Os12g02020
OsAffx.7458.1.S1_x_at--29--9672Chr12:600749..600773 (25 bp)
TCAGCCTGAGTTGCTGACGTCGGTG
LOC_Os12g02020
OsAffx.7458.1.S1_x_at--1127--1433Chr12:600776..600800 (25 bp)
AGAAGCATTCGAGGAGCTTGGCCTC
LOC_Os12g02020
OsAffx.7458.1.S1_x_at--755--10852Chr12:600793..600817 (25 bp)
TTGGCCTCGACGTCCTTGATGCTGA
LOC_Os12g02020
OsAffx.7458.1.S1_x_at--78--10871Chr11:557390..557569 (25 bp)
TTGGATCCAGCCAAAGTGAAGCTGC
LOC_Os11g02054
Target Sequence 
GAAGAGAAGCTCGAGCTCCTACGTTCTGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTCGTAGATGCGTCCAA
GTACATCAAAGAGCTCAAGGACAAGGTATCTCAGNNGNCNGANNNGCNNNGCNGNNNNNNNNNNNNNNTNNNNNNGNCNN
NNGTNAGTGTTTCATCGGTAGAGCTAGAGAAGAAGANAGGTTTTCGAATCAATGTGTCNATGGAGAAGAGTCAGCCTGAG
TTGCTGACGTCGGTGNTAGAAGCATTCGAGGAGCTTGGCCTCGACGTCCTTGATGCTGACGTGTCGTGCGCAGANGACAC
CGCNTTTCGTNTTGAAGCGNTTGGATCCAGCCAAAGTGAAGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7458.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis