Browse Element(s) Details


Os.46087.1.S1_at

Description gb:AK120264.1
DB_XREF= gi:37989887
TID=Os.46087.1
CNT=33
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047D01, full insert sequence.
FL= gb:AK119685.1 gb:AK120264.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g020409/11Hypoxia induced protein conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01990OsAffx.31548.1.S1_at11/1112+580870..582002hypothetical protein
LOC_Os12g01990OsAffx.31548.1.S1_x_at10/1112+580870..582002hypothetical protein
LOC_Os12g02000Os.52045.1.S1_at11/1112+582904..584609expressed protein
LOC_Os12g02000Os.51572.1.S1_x_at1/1112+582904..584609expressed protein
LOC_Os12g02010OsAffx.22759.1.S1_at8/1112+591045..593348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g02020Os.51497.1.A1_s_at11/1112+598639..601697expressed protein
LOC_Os12g02020OsAffx.7458.1.S1_x_at10/1112+598639..601697expressed protein
LOC_Os12g02020Os.18660.1.S1_x_at1/1112+598639..601697expressed protein
LOC_Os12g02030Os.8562.1.S1_a_at11/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02030Os.8562.2.S1_x_at10/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02030Os.8562.1.S1_x_at4/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02040Os.46087.1.S1_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.12584.1.S1_x_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_x_at7/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_at3/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02050OsAffx.18633.1.S1_at11/1112+609165..611432expressed protein
LOC_Os12g02050OsAffx.18633.1.S1_s_at11/1112+609165..611432expressed protein
LOC_Os12g02050OsAffx.18633.2.S1_at1/1112+609165..611432expressed protein
LOC_Os12g02060Os.55595.1.S1_at5/1112+613316..614845Cationic peroxidase 1 precursor, putative, expressed
LOC_Os12g02070Os.50351.1.S1_s_at3/1112+615651..616635expressed protein
LOC_Os12g02070Os.50351.1.S1_at1/1112+615651..616635expressed protein
LOC_Os12g02080Os.11549.1.S1_at11/1112+622582..625113Peroxidase 52 precursor, putative, expressed
LOC_Os12g02090OsAffx.31549.2.S1_x_at3/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02090OsAffx.31549.1.S1_x_at2/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02100Os.39076.1.A1_s_at11/1112+631454..637030expressed protein
LOC_Os12g02100Os.52675.1.S1_at11/1112+631454..637030expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46087.1.S1_at--523--10771Chr12:606411..606435 (25 bp)
TTGATCTCTAAAAATGTGCACTAAA
LOC_Os12g02040
Os.46087.1.S1_at--549--8372Chr12:606351..606375 (25 bp)
GGCGTCATTCAGTAATCGTGACATT
LOC_Os12g02040
Os.46087.1.S1_at--407--9411Chr12:606336..606360 (25 bp)
TCGTGACATTGTATTATTACTCCTA
LOC_Os12g02040
Os.46087.1.S1_at--764--7952Chr12:606249..606273 (25 bp)
GGATCAACAAGTCAGCACTACTACT
LOC_Os12g02040
Os.46087.1.S1_at--502--9891Chr12:606231..606255 (25 bp)
TACTACTCCGCAAGGACTACCAAGG
LOC_Os12g02040
Os.46087.1.S1_at--435--8131NONE
GGACTACCAAGGAGCGCGCAGGACT
NONE
Os.46087.1.S1_at--409--8071Chr12:605681..605705 (25 bp)
GGAGCGCGCAGGACTGCCTTAATTC
LOC_Os12g02040
Os.46087.1.S1_at--227--4311Chr12:605666..605690 (25 bp)
GCCTTAATTCCCCACTAGTGTAGAC
LOC_Os12g02040
Os.46087.1.S1_at--797--10071Chr12:605651..605675 (25 bp)
TAGTGTAGACCTTCTGTAAGCCCAG
LOC_Os12g02040
Os.46087.1.S1_at--308--9791Chr12:605635..605659 (25 bp)
TAAGCCCAGGGCTGTCTATTCCTCA
LOC_Os12g02040
Os.46087.1.S1_at--758--5311Chr12:605574..605598 (25 bp)
GAAGTCCTACAGTAAAACCATTTTG
NONE
Target Sequence 
TTGATCTCTAAAAATGTGCACTAAAAATGAGTATATGCCGAANCGNCAANGTTCTGTTANGGCGTCATTCAGTAATCGTG
ACATTGTATTATTACTCCTANTAANCTTCCGNTTTTGNTTTGNTANNCAATGATAATCCGGCCTGGANTCAANGCCATGT
TGTTAGGATCAACAAGTCAGCACTACTACTCCGCAAGGACTACCAAGGAGCGCGCAGGACTGCCTTAATTCCCCACTAGT
GTAGACCTTCTGTAAGCCCAGGGCTGTCTATTCCTCATGCATATGTTTGTTCCTGCTACAATCAAATTATTAAGAAGTCC
TACAGTAAAACCATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis