Browse Element(s) Details


Os.50351.1.S1_at

Description gb:AK120830.1
DB_XREF= gi:37990453
TID=Os.50351.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019I07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019I07, full insert sequence.
FL= gb:AK120830.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0211011/11expressed protein
LOC_Os12g020701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02054Os.51497.1.A1_s_at11/1111+551471..557822expressed protein
LOC_Os11g02054OsAffx.7458.1.S1_x_at10/1111+551471..557822expressed protein
LOC_Os11g02054Os.18660.1.S1_x_at9/1111+551471..557822expressed protein
LOC_Os11g02070Os.8562.1.S1_x_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.1.S1_a_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.2.S1_x_at4/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02080Os.12584.1.S1_x_at11/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_x_at7/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02080Os.2331.1.S1_at2/1111+562201..562985Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g02090OsAffx.18633.1.S1_at11/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.2.S1_at9/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.1.S1_s_at3/1111+565282..567861expressed protein
LOC_Os11g02100Os.55595.1.S1_at11/1111+570322..572021Cationic peroxidase 1 precursor, putative, expressed
LOC_Os11g02110Os.50351.1.S1_s_at11/1111+572572..573727expressed protein
LOC_Os11g02110Os.50351.1.S1_at11/1111+572572..573727expressed protein
LOC_Os11g02120Os.46459.1.S1_at1/1111+578798..580488transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g02130Os.11549.1.S1_at2/1111+582211..584405Peroxidase 52 precursor, putative, expressed
LOC_Os11g02140NANA11+589587..589874hypothetical protein
LOC_Os11g02150Os.14873.1.S1_at10/1111+591079..593754Saposin-like type B, region 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50351.1.S1_at--852--7572Chr12:616579..616603 (25 bp)
GGGCGGGCAGCTGGAAGCGGCGCTG
LOC_Os12g02070
Os.50351.1.S1_at--578--9231Chr11:573492..573512 (21 bp)
TCCATCAGCGCAACAAAACCGAGAG
LOC_Os11g02110
Os.50351.1.S1_at--807--391Chr11:573388..573509 (25 bp)
ATCAGCGCAACAAAACCGAGAGAGT
LOC_Os11g02110
Os.50351.1.S1_at--215--3391Chr11:573386..573507 (25 bp)
CAGCGCAACAAAACCGAGAGAGTAA
LOC_Os11g02110
Os.50351.1.S1_at--889--2611Chr11:573375..573395 (21 bp)
AACCGAGAGAGTAAAGGTGGATGCT
LOC_Os11g02110
Os.50351.1.S1_at--853--7511Chr11:573359..573383 (25 bp)
GTGGATGCTGTGAAGAGCGCGGCGC
LOC_Os11g02110
Os.50351.1.S1_at--174--10091Chr11:572679..572703 (25 bp)
TAGGACTGGTTTGCTCTACACAATG
LOC_Os11g02110
Os.50351.1.S1_at--1119--931Chr11:572678..572702 (25 bp)
AGGACTGGTTTGCTCTACACAATGG
LOC_Os11g02110
Os.50351.1.S1_at--688--8111Chr11:572677..572701 (25 bp)
GGACTGGTTTGCTCTACACAATGGA
LOC_Os11g02110
Os.50351.1.S1_at--568--8571Chr11:572673..572697 (25 bp)
TGGTTTGCTCTACACAATGGATAAA
LOC_Os11g02110
Os.50351.1.S1_at--752--9091Chr11:572668..572692 (25 bp)
TGCTCTACACAATGGATAAACAAAA
LOC_Os11g02110
Target Sequence 
GGGCGGGCAGCTGGAAGCGGCGCTGCTCCACATCATGCAACGCCACCACCACCAATCCCTCCATCAGCGCAACAAAACCG
AGAGAGTAAAGGTGGATGCTGTGAAGAGCGCGGCGCGGGTTGCAGATCTTCTCGTGGCCACGGTTGACGGTGGAGTGCAG
GAGCTCTACATCAACGAGAGGCGCATAGAGTTTGAAGCCCGCGCGCTGCTTGCTACAATNGCGCGGTTCAAGAAGCAGAC
TGACCAGTGGCTTGCTGCCACCAACGCAATCAACTCTGTCTTGAAGGAAATTGGAGATTTTGAGAACTGGATGAAGATCA
TGGATTTCGACTGTAAAAGTATAAATGCAGCTATCCGTAACATTCACCAATCCTGACTCTGCTTTCGACTATGGTGTTAG
GAATATTTTATCCTGTTCCTACTCAGCTAGCACCTTTTTTTTCATTTGAGTTGTCAACTCTGTTGTATAGGACTGGTTTG
CTCTACACAATGGATAAACAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis