Browse Element(s) Details


Os.57376.1.S1_s_at

Description gb:AK111408.1
DB_XREF= gi:32996617
TID=Os.57376.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-E11, full insert sequence.
FL= gb:AK111408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0200011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01950OsAffx.30775.1.S1_at11/1111+512297..512948hypothetical protein
LOC_Os11g01960Os.38751.1.A1_at10/1111+513988..515571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g01960OsAffx.8338.1.S1_x_at1/1111+513988..515571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g01960OsAffx.916.1.S1_x_at1/1111+513988..515571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g01970Os.46012.2.S1_x_at10/1111+517937..523281retrotransposon protein, putative, unclassified
LOC_Os11g01970Os.46012.3.S1_x_at8/1111+517937..523281retrotransposon protein, putative, unclassified
LOC_Os11g01970Os.27088.1.A1_x_at6/1111+517937..523281retrotransposon protein, putative, unclassified
LOC_Os11g01970Os.54691.1.S1_x_at1/1111+517937..523281retrotransposon protein, putative, unclassified
LOC_Os11g01980NANA11+524467..525275hypothetical protein
LOC_Os11g01990NANA11+530016..531080expressed protein
LOC_Os11g02000Os.57376.1.S1_s_at11/1111+532001..534129expressed protein
LOC_Os11g02010Os.56115.1.S1_at10/1111+536011..537453transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g02020Os.52045.1.S1_at1/1111+539153..541921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02020Os.52238.1.S1_at1/1111+539153..541921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02030OsAffx.30777.1.S1_at11/1111+543484..544182hypothetical protein
LOC_Os11g02040OsAffx.18632.1.S1_at10/1111+545279..547231hypothetical protein
LOC_Os11g02040OsAffx.22791.3.A1_at1/1111+545279..547231hypothetical protein
LOC_Os11g02054Os.51497.1.A1_s_at11/1111+551471..557822expressed protein
LOC_Os11g02054OsAffx.7458.1.S1_x_at10/1111+551471..557822expressed protein
LOC_Os11g02054Os.18660.1.S1_x_at9/1111+551471..557822expressed protein
LOC_Os11g02070Os.8562.1.S1_x_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.1.S1_a_at11/1111+557815..559661BTB/POZ domain containing protein, expressed
LOC_Os11g02070Os.8562.2.S1_x_at4/1111+557815..559661BTB/POZ domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57376.1.S1_s_at--732--6091Chr11:532548..532572 (25 bp)
GAGTCATCCTCCACCTAAAAGAAAC
LOC_Os11g02000
Os.57376.1.S1_s_at--332--4732Chr11:532506..532530 (25 bp)
GCTGGGCTCTGAGATGGTCAATCTT
LOC_Os11g02000
Os.57376.1.S1_s_at--1055--2411Chr11:532396..532420 (25 bp)
AAAACTTCTACTCTTACAGGCTGCA
LOC_Os11g02000
Os.57376.1.S1_s_at--867--8332Chr11:532378..532402 (25 bp)
GGCTGCATATACATTCACTGAAAGT
LOC_Os11g02000
Os.57376.1.S1_s_at--49--9731Chr11:532333..532357 (25 bp)
TAATATGCAGAAGCCCGAAGGTTTA
LOC_Os11g02000
Os.57376.1.S1_s_at--70--8871Chr11:532281..532305 (25 bp)
TGATGCAGTCTATTTCATGTCTTAG
LOC_Os11g02000
Os.57376.1.S1_s_at--986--731Chr11:532248..532272 (25 bp)
ATGTATCACAATCTGCAGCATATCA
LOC_Os11g02000
Os.57376.1.S1_s_at--92--411Chr11:532227..532251 (25 bp)
ATCAGGCATACTCCCTTTAGACATG
LOC_Os11g02000
Os.57376.1.S1_s_at--57--5211Chr11:532191..532215 (25 bp)
GAATTGCCTACTGCAAGCTTACAAA
LOC_Os11g02000
Os.57376.1.S1_s_at--22--6971Chr11:532086..532110 (25 bp)
GTAGCAGTTCAGATGCCTGGGCAGA
LOC_Os11g02000
Os.57376.1.S1_s_at--419--4471Chr11:532072..532096 (25 bp)
GCCTGGGCAGACGTGAAGTCCATAA
LOC_Os11g02000
Target Sequence 
GAGTCATCCTCCACCTAAAAGAAACTACAGACATGAATAAGAGCTGGGCTCTGAGATGGTCAATCTTGCATAAACAAACC
ACTGGCATCATGCTAACATGCCAGAGATGAGAGCCAATAATCTTCTCAAAGCAGGTGAGTGAAGTGAAGCATAAAACTTC
TACTCTTACAGGCTGCATATACATTCACTGAAAGTTCTGAAAGTAGCAAGAAAATTAATATGCAGAAGCCCGAAGGTTTA
GACAGATTATGCTGTCAAATTGCACAATGATGCAGTCTATTTCATGTCTTAGATTATTTTATGTATCACAATCTGCAGCA
TATCAGGCATACTCCCTTTAGACATGGAAGTACTATAGAATTGCCTACTGCAAGCTTACAAATAGGAGTACATTCAGAGA
TGTAATGAGAATGCCTATAATGAGTTTGTAATGTGAATTTTCTGCACAAAATTGTACTCCAAGTAGCAGTTCAGATGCCT
GGGCAGACGTGAAGTCCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57376.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis