Browse Element(s) Details


OsAffx.32190.1.S1_at

Description gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32190.1
CNT=1
FEA=DNA_11
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=unnamed protein product; ORF91 (Oryza sativa (japonica cultivar-group)) chloroplast
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g241601/11Double-stranded RNA binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24120Os.23706.1.A1_x_at1/115+13831965..13837549retrotransposon protein, putative, unclassified
LOC_Os05g24130OsAffx.14799.1.S1_at11/115+13841888..13842130hypothetical protein
LOC_Os05g24140OsAffx.14800.1.S1_at11/115+13847796..13850669expressed protein
LOC_Os05g24150OsAffx.26994.1.S1_at11/115+13851093..13854620pentatricopeptide, putative, expressed
LOC_Os05g24150OsAffx.11634.2.S1_x_at1/115+13851093..13854620pentatricopeptide, putative, expressed
LOC_Os05g24160Os.3740.3.S1_at11/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.30773.3.S1_x_at11/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160Os.3740.3.S1_s_at10/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160Os.51834.1.S1_at5/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.30773.1.S1_x_at5/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.30773.2.S1_x_at4/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.32190.1.S1_x_at2/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.32190.1.S1_at1/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24170Os.46012.2.S1_x_at8/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24170Os.46012.3.S1_x_at6/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24170Os.27088.1.A1_x_at4/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24170Os.54691.1.S1_x_at1/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24180OsAffx.26996.1.S1_x_at11/115+13886201..13886584hypothetical protein
LOC_Os05g24180OsAffx.26996.1.S1_at11/115+13886201..13886584hypothetical protein
LOC_Os05g24190OsAffx.19542.3.S1_x_at4/115+13891540..13895431retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0035279biological_processmiRNA-mediated gene silencing, mRNA cleavage
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0000166molecular_functionnucleotide binding
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32190.1.S1_at--643--10396Chr02:14276407..14276431 (25 bp)
TTTTGGTAATGGTCTCGGGCCTATA
NONE
OsAffx.32190.1.S1_at--168--10236Chr02:14276408..14276432 (25 bp)
TTTGGTAATGGTCTCGGGCCTATAT
NONE
OsAffx.32190.1.S1_at--734--10776Chr02:14276409..14276433 (25 bp)
TTGGTAATGGTCTCGGGCCTATATG
NONE
OsAffx.32190.1.S1_at--1046--816Chr02:14276415..14276471 (25 bp)
ATGGTCTCGGGCCTATATGTTCTTT
NONE
OsAffx.32190.1.S1_at--430--7811NONE
GGTCTCGGGCCTATATGTTCTTTTT
NONE
OsAffx.32190.1.S1_at--575--7151NONE
GTCTCGGGCCTATATGTTCTTTTTT
NONE
OsAffx.32190.1.S1_at--233--9511NONE
TCTCGGGCCTATATGTTCTTTTTTG
NONE
OsAffx.32190.1.S1_at--987--3731NONE
CTCGGGCCTATATGTTCTTTTTTGT
NONE
OsAffx.32190.1.S1_at--235--3991NONE
CGGGCCTATATGTTCTTTTTTGTGT
NONE
OsAffx.32190.1.S1_at--990--7551NONE
GGGCCTATATGTTCTTTTTTGTGTG
NONE
OsAffx.32190.1.S1_at--412--4451Chr05:13864828..13864847 (20 bp)
GCCTATATGTTCTTTTTTGTGTGTT
LOC_Os05g24160
Target Sequence 
TTTTGGTAATGGTCTCGGGCCTATATGTTCTTTTTTGTGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis