Browse Element(s) Details


OsAffx.26994.1.S1_at

Description tigr:9633.m02153
TID=OsAffx.26994.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2415011/11pentatricopeptide, putative, expressed
LOC_Os05g248903/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24110NANA5+13827663..13829309hypothetical protein
LOC_Os05g24120Os.23706.1.A1_x_at1/115+13831965..13837549retrotransposon protein, putative, unclassified
LOC_Os05g24130OsAffx.14799.1.S1_at11/115+13841888..13842130hypothetical protein
LOC_Os05g24140OsAffx.14800.1.S1_at11/115+13847796..13850669expressed protein
LOC_Os05g24150OsAffx.26994.1.S1_at11/115+13851093..13854620pentatricopeptide, putative, expressed
LOC_Os05g24150OsAffx.11634.2.S1_x_at1/115+13851093..13854620pentatricopeptide, putative, expressed
LOC_Os05g24160Os.3740.3.S1_at11/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.30773.3.S1_x_at11/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160Os.3740.3.S1_s_at10/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160Os.51834.1.S1_at5/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.30773.1.S1_x_at5/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.30773.2.S1_x_at4/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.32190.1.S1_x_at2/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24160OsAffx.32190.1.S1_at1/115+13861625..13868589Double-stranded RNA binding motif family protein, expressed
LOC_Os05g24170Os.46012.2.S1_x_at8/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24170Os.46012.3.S1_x_at6/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24170Os.27088.1.A1_x_at4/115+13872144..13879440retrotransposon protein, putative, unclassified
LOC_Os05g24170Os.54691.1.S1_x_at1/115+13872144..13879440retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26994.1.S1_at--366--2392Chr05:14338123..14338147 (25 bp)
AAACTCCAGGTTGCAGCTGGGTTGA
LOC_Os05g24890
OsAffx.26994.1.S1_at--860--7612Chr05:14338155..14338179 (25 bp)
GGGAAAGTCCTTGAATTCTATGCAG
LOC_Os05g24890
OsAffx.26994.1.S1_at--1068--7252Chr05:14338218..14338242 (25 bp)
GTCCTAGACCTACTGGTTGATGAGA
LOC_Os05g24890
OsAffx.26994.1.S1_at--1049--9151Chr05:13851726..13851750 (25 bp)
TGCCCTGGGCTAGTGTATATGCAGC
LOC_Os05g24150
OsAffx.26994.1.S1_at--737--651Chr05:13851708..13851732 (25 bp)
ATGCAGCCATCCATTGTTTGGTGTC
LOC_Os05g24150
OsAffx.26994.1.S1_at--379--7491Chr05:13851670..13851694 (25 bp)
GTGGGATGTGTCTTGGACGCCAAAT
LOC_Os05g24150
OsAffx.26994.1.S1_at--1144--3111Chr05:13851648..13851672 (25 bp)
AATTTGTTTCTCTTTGGCTTGGTTG
LOC_Os05g24150
OsAffx.26994.1.S1_at--551--2291Chr05:13851555..13851575 (21 bp)
AAATGGTGAAGCCTGGTTCAGCAGT
LOC_Os05g24150
OsAffx.26994.1.S1_at--325--6751Chr05:13851540..13851564 (25 bp)
GTTCAGCAGTGCAGGTGACCAAACG
LOC_Os05g24150
OsAffx.26994.1.S1_at--1092--6351Chr05:13851230..13851254 (25 bp)
GATGCCAAATGGCTCTTGATGCAAA
LOC_Os05g24150
OsAffx.26994.1.S1_at--409--8991Chr05:13851180..13851204 (25 bp)
TGAAGCTTCAGCCTTGATCAAGTTT
LOC_Os05g24150
Target Sequence 
AAACTCCAGGTTGCAGCTGGGTTGAGNTTAGNGGGAAAGTCCTTGAATTCTATGCAGGGGACGAACCACAGCATGGTGCA
GATGATATGTATCANGTCCTAGACCTACTGGTTGATGAGATGAGGNTGGANGGATATGTTCCAAATCTTGATGTGGNGNN
NCTGCCCTGGGCTAGTGTATATGCAGCCATCCATTGTTTGGTGTCCCGCAGCCTGCAGGTGGGATGTGTCTTGGACGCCA
AATTTGTTTCTCTTTGGCTTGGTTGGCACGAGCCAGAAATGGTGAAGCCTGGTTCAGCAGTGCAGGTGACCAAACGCCAA
AATGTGGCATTGAAAACAGATACAGGTAAGGTTTATAGTGGAAACATGGATGCCAAATGGCTCTTGATGCAAAAATGGGT
GAAGCTATATTATTTTTCTGAAGCTTCAGCCTTGATCAAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis