Browse Element(s) Details


Os.2321.1.S1_at

Description gb:AF141879.1
DB_XREF= gi:5499731
GEN=RGLP2
TID=Os.2321.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2321 (NCBI UniGene Cluster)
DEF=Oryza sativa germin-like protein 2 precursor (RGLP2) mRNA, complete cds.
PROD=germin-like protein 2 precursor
FL= gb:AF141879.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0906010/11Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g089801/11Germin-like protein subfamily 1 member 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09000NANA8+5232728..5233582Germin-like protein subfamily 1 member 7 precursor, putative
LOC_Os08g09010Os.2211.1.S1_at11/118+5236153..5237313Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09020Os.23557.1.A1_at1/118+5242446..5243310Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os08g09030OsAffx.29111.1.S1_at11/118+5243646..5244227hypothetical protein
LOC_Os08g09040Os.23557.1.A1_at1/118+5247948..5248886Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09050OsAffx.16907.1.S1_at8/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.26996.1.S1_x_at3/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.26996.1.S1_at2/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.10528.1.S1_at1/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.29111.1.S1_at1/118+5250093..5252825hypothetical protein
LOC_Os08g09060Os.2321.1.S1_at10/118+5253811..5254949Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09069NANA8+5256252..5256684NA
LOC_Os08g09080Os.2320.1.S1_at11/118+5257901..5259004Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09090OsAffx.16908.1.S1_at10/118+5260531..5261145hypothetical protein
LOC_Os08g09100Os.11850.1.S1_at10/118+5261760..5266708RNA Binding Protein 45, putative, expressed
LOC_Os08g09110OsAffx.16909.1.S1_at11/118+5268520..5272950NB-ARC domain containing protein, expressed
LOC_Os08g09120OsAffx.29112.1.S1_at10/118+5273930..5274450hypothetical protein
LOC_Os08g09130OsAffx.29113.1.S1_at10/118+5277633..5279258hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005886cellular_componentplasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2321.1.S1_at--97--6031Chr08:5254456..5254480 (25 bp)
GAGATCCTTACTGTCCTCGAGGGAA
LOC_Os08g09060
Os.2321.1.S1_at--97--10411Chr08:5254463..5254487 (25 bp)
TTACTGTCCTCGAGGGAACCCTCTA
LOC_Os08g09060
Os.2321.1.S1_at--656--9672Chr08:5254499..5254523 (25 bp)
TCACGTCTAACCCAAACAACACATT
LOC_Os08g09060
Os.2321.1.S1_at--704--3271Chr08:5254515..5254539 (25 bp)
CAACACATTGTTCTCCAAGGTGCTC
LOC_Os08g09060
Os.2321.1.S1_at--1144--8071NONE
GGACCAAAGCCACCGATTTCAGACA
NONE
Os.2321.1.S1_at--1073--4231Chr08:5254690..5254714 (25 bp)
CCGATTTCAGACATAGTTTTGGCAA
LOC_Os08g09060
Os.2321.1.S1_at--656--5972Chr08:5254768..5254792 (25 bp)
GAGAACAACCACTATTAATTGCCTT
LOC_Os08g09060
Os.2321.1.S1_at--1065--6871Chr08:5254854..5254878 (25 bp)
GTATTTTGTATTTCTTATCCGTTCT
LOC_Os08g09060
Os.2321.1.S1_at--879--171Chr08:5254863..5254887 (25 bp)
ATTTCTTATCCGTTCTTCCAAGGTG
LOC_Os08g09060
Os.2321.1.S1_at--949--3571Chr08:5254877..5254901 (25 bp)
CTTCCAAGGTGTTTGTTCTTTACAT
LOC_Os08g09060
Os.2321.1.S1_at--904--351Chr08:5254925..5254949 (25 bp)
ATAATACATGTATGGTTTCCCGTCG
LOC_Os08g09060
Target Sequence 
GAGATCCTTACTGTCCTCGAGGGAACCCTCTACGTCGGCTTCGTCACGTCTAACCCAAACAACACATTGTTCTCCAAGGT
GCTCAACAAGGGTGATGTGTTCGTGTTCCCCGAGGGGCTCATCCACTTCCAATTCAACCCTAACCCTCATCAACCCGCAG
TTGCAATTGCTGCACTAAGCAGCCAAAACCCTGGTGCCATCACTATTGCAAATGCAGTGTTCGGACCAAAGCCACCGATT
TCAGACATAGTTTTGGCAAAGGCATTCCAAGTTGAAAAGGGCACCATTGATTGGCTCCAGGCTCAGTTCTGGGAGAACAA
CCACTATTAATTGCCTTAAAAAAATTATGCTTACAGAATCTATGTTGTAATTTCATATATAGCATAAATAAGTGGTATGT
ATTTTGTATTTCTTATCCGTTCTTCCAAGGTGTTTGTTCTTTACATTTATGTACTAATGTAAGGCCAATATAATACATGT
ATGGTTTCCCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis