Browse Element(s) Details


Os.2211.1.S1_at

Description gb:AF032976.1
DB_XREF= gi:2655294
GEN=GER6
TID=Os.2211.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.2211 (NCBI UniGene Cluster)
DEF=Oryza sativa germin-like protein 6 (GER6) mRNA, complete cds.
PROD=germin-like protein 6
FL= gb:AF032976.1 gb:AK061029.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0901011/11Germin-like protein subfamily 1 member 11 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08970Os.2210.1.S1_at11/118+5215876..5216960Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g08980Os.2209.1.S1_at11/118+5222478..5223690Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g08980Os.2321.1.S1_at1/118+5222478..5223690Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g08990NANA8+5227520..5228375Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09000NANA8+5232728..5233582Germin-like protein subfamily 1 member 7 precursor, putative
LOC_Os08g09010Os.2211.1.S1_at11/118+5236153..5237313Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09020Os.23557.1.A1_at1/118+5242446..5243310Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os08g09030OsAffx.29111.1.S1_at11/118+5243646..5244227hypothetical protein
LOC_Os08g09040Os.23557.1.A1_at1/118+5247948..5248886Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09050OsAffx.16907.1.S1_at8/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.26996.1.S1_x_at3/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.26996.1.S1_at2/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.10528.1.S1_at1/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.29111.1.S1_at1/118+5250093..5252825hypothetical protein
LOC_Os08g09060Os.2321.1.S1_at10/118+5253811..5254949Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09069NANA8+5256252..5256684NA
LOC_Os08g09080Os.2320.1.S1_at11/118+5257901..5259004Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09090OsAffx.16908.1.S1_at10/118+5260531..5261145hypothetical protein
LOC_Os08g09100Os.11850.1.S1_at10/118+5261760..5266708RNA Binding Protein 45, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2211.1.S1_at--277--7351Chr08:5236772..5236796 (25 bp)
GTGCAACTGAGATCCTCACAGTCCT
LOC_Os08g09010
Os.2211.1.S1_at--843--9671Chr08:5236787..5236811 (25 bp)
TCACAGTCCTTGAGGGAACCCTCTA
LOC_Os08g09010
Os.2211.1.S1_at--851--2611Chr08:5236803..5236827 (25 bp)
AACCCTCTATGTCGGCTTTGTCACA
LOC_Os08g09010
Os.2211.1.S1_at--496--7191Chr08:5236813..5236837 (25 bp)
GTCGGCTTTGTCACATCTAATCCAA
LOC_Os08g09010
Os.2211.1.S1_at--933--391Chr08:5236928..5236952 (25 bp)
ATCAGCCTGCGGTTGCACTTGCTGC
LOC_Os08g09010
Os.2211.1.S1_at--425--3971Chr08:5236937..5236961 (25 bp)
CGGTTGCACTTGCTGCACTTAGCAG
LOC_Os08g09010
Os.2211.1.S1_at--1094--3951Chr08:5237001..5237025 (25 bp)
CGGATCAAAGCCACCGATCTCAGAT
LOC_Os08g09010
Os.2211.1.S1_at--34--2371Chr08:5237007..5237031 (25 bp)
AAAGCCACCGATCTCAGATGATATT
LOC_Os08g09010
Os.2211.1.S1_at--1157--711Chr08:5237255..5237279 (25 bp)
ATGTTGTTCTAGTGTGGTATCCCCT
LOC_Os08g09010
Os.2211.1.S1_at--1125--3691Chr08:5237263..5237287 (25 bp)
CTAGTGTGGTATCCCCTGTTATAAA
LOC_Os08g09010
Os.2211.1.S1_at--361--8591Chr08:5237269..5237293 (25 bp)
TGGTATCCCCTGTTATAAAGGTAAT
LOC_Os08g09010
Target Sequence 
GTGCAACTGAGATCCTCACAGTCCTTGAGGGAACCCTCTATGTCGGCTTTGTCACATCTAATCCAAANCAANCACANTAT
TCTCCAAGGTGCTCAANCAAGGGTGATGTGTTTGTTTTCCCTGAGGGGCTCATCCACTTCCAATTCAACCCTAACCCCCA
TCAGCCTGCGGTTGCACTTGCTGCACTTAGCAGCCAAAACCCTGGGGCTATTACCATTGCAAATGCAGTGTTCGGATCAA
AGCCACCGATCTCAGATGATATTTTGGCAAAGGCATTCCAGGTTGAGAAGGGCACCATTGATTGGCTCCAGGCTCAGTTT
TGGGAGAACAACCACTACTAAATCTAAACAAAGTATATGTGTTGTTATACTATGTATAAGTTTCTATTCTGCAATATATA
AAATAAATTTGTATTTCTAGTCGGCTTAATTATGTGTGCTTGCAAGCACATCAACAATACATTATTTTGTTGGGAAAAGG
CTTTGTATGTTGTTCTAGTGTGGTATCCCCTGTTATAAAGGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis