Browse Element(s) Details


Os.2209.1.S1_at

Description gb:AF032971.1
DB_XREF= gi:2655284
GEN=GER1
TID=Os.2209.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.2209 (NCBI UniGene Cluster)
DEF=Oryza sativa germin-like protein 1 (GER1) mRNA, complete cds.
PROD=germin-like protein 1
FL= gb:AF032971.1 gb:AK059338.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0898011/11Germin-like protein subfamily 1 member 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08950Os.47463.1.S1_x_at4/118+5194673..5199735transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08950Os.14491.2.S1_x_at3/118+5194673..5199735transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08960Os.1853.1.S1_at11/118+5202045..5203162Germin-like protein subfamily 1 member 14 precursor, putative, expressed
LOC_Os08g08970Os.2210.1.S1_at11/118+5215876..5216960Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g08980Os.2209.1.S1_at11/118+5222478..5223690Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g08980Os.2321.1.S1_at1/118+5222478..5223690Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g08990NANA8+5227520..5228375Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09000NANA8+5232728..5233582Germin-like protein subfamily 1 member 7 precursor, putative
LOC_Os08g09010Os.2211.1.S1_at11/118+5236153..5237313Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09020Os.23557.1.A1_at1/118+5242446..5243310Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os08g09030OsAffx.29111.1.S1_at11/118+5243646..5244227hypothetical protein
LOC_Os08g09040Os.23557.1.A1_at1/118+5247948..5248886Germin-like protein subfamily 1 member 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2209.1.S1_at--255--10131Chr08:5223069..5223093 (25 bp)
TATGCGCCTTTAGGTGTGAACCCAC
LOC_Os08g08980
Os.2209.1.S1_at--22--5631Chr08:5223207..5223231 (25 bp)
GACACATTTGTGTTTCCTAAGGCAA
LOC_Os08g08980
Os.2209.1.S1_at--1077--6351Chr08:5223233..5223257 (25 bp)
GATCCACTTCCAAATGAATTTAGAC
LOC_Os08g08980
Os.2209.1.S1_at--245--351Chr08:5223262..5223286 (25 bp)
ATAAACCAGCAGTTGCCCAGTCATC
LOC_Os08g08980
Os.2209.1.S1_at--107--4171Chr08:5223277..5223301 (25 bp)
CCCAGTCATCACTCAACAGTCAAAA
LOC_Os08g08980
Os.2209.1.S1_at--1009--6051Chr08:5223307..5223331 (25 bp)
GAGTTATTACAATTGCTAGTGCGGT
LOC_Os08g08980
Os.2209.1.S1_at--960--8051Chr08:5223425..5223449 (25 bp)
GGAGAGCAACTACTGATTATCTCAT
LOC_Os08g08980
Os.2209.1.S1_at--860--6571Chr08:5223453..5223477 (25 bp)
GATTCTCCCTAATCAATTGATGCAA
LOC_Os08g08980
Os.2209.1.S1_at--556--5551Chr08:5223491..5223515 (25 bp)
GAAACCTGTACTTCATTGTAGTATG
LOC_Os08g08980
Os.2209.1.S1_at--123--351Chr08:5223520..5223544 (25 bp)
ATAAATGGGCTTTTGTCCTATCAAA
LOC_Os08g08980
Os.2209.1.S1_at--1074--10111Chr08:5223555..5223579 (25 bp)
TATGTTGTACGTGTGCTTTCTTGCT
LOC_Os08g08980
Target Sequence 
TATGCGCCTTTAGGTGTGAACCCACCACACATTCACCCACGTGCTACCGAGCTCCTCACTGTGCTTGAGGGAACACTCTA
TGTTGGCTTTGTCACGTCTAANCCCAAACAGGCTCTTCTCTAAGGTGGTTCATAAGGGTGACACATTTGTGTTTCCTAAG
GCAATGATCCACTTCCAAATGAATTTAGACCACANATAAACCAGCAGTTGCCCAGTCATCACTCAACAGTCAAAACCCTG
GAGTTATTACAATTGCTAGTGCGGTGTTTGGATCAAAGCCACCAATCTCTGATGATGTTCTGACCAAGGCATTTCAAGTG
GAAAAGAAGGTGATTGATTGGCTCAAATCTCAGTTCTGGGAGAGCAACTACTGATTATCTCATACTGATTCTCCCTAATC
AATTGATGCAAGTATGATATATATGAAACCTGTACTTCATTGTAGTATGTAGAATAAATGGGCTTTTGTCCTATCAAAAA
TGTCATAATATGTTGTACGTGTGCTTTCTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis