Browse Element(s) Details


Os.23567.1.S1_at

Description gb:AK073315.1
DB_XREF= gi:32983338
TID=Os.23567.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.23567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033026B10, full insert sequence.
FL= gb:AK120546.1 gb:AK073315.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1064911/11GTP-binding protein ERG, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10612Os.57002.1.S1_at11/118+6245011..6245864expressed protein
LOC_Os08g10620OsAffx.16937.2.S1_at9/118+6249568..6251757hypothetical protein
LOC_Os08g10630Os.54471.1.S1_at11/118+6261481..6264553ZIP zinc/iron transport family protein, expressed
LOC_Os08g10630Os.47413.1.S1_x_at1/118+6261481..6264553ZIP zinc/iron transport family protein, expressed
LOC_Os08g10649Os.23567.2.S1_at11/118+6265872..6274575GTP-binding protein ERG, putative, expressed
LOC_Os08g10649Os.23567.1.S1_at11/118+6265872..6274575GTP-binding protein ERG, putative, expressed
LOC_Os08g10670Os.54821.1.S1_at11/118+6274879..6280325Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g10680NANA8+6287738..6288025hypothetical protein
LOC_Os08g10690NANA8+6291160..6291399hypothetical protein
LOC_Os08g10700NANA8+6292639..6292896hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23567.1.S1_at--146--7271Chr08:6273870..6273894 (25 bp)
GTCCATATTCAAGCGAGATGTCCAT
LOC_Os08g10649
Os.23567.1.S1_at--308--8711Chr08:6273888..6273912 (25 bp)
TGTCCATCTGATCCTCCAAGTTAGA
LOC_Os08g10649
Os.23567.1.S1_at--620--6871Chr08:6274167..6274191 (25 bp)
GTATAGACAACCTTTTCCCAATTTG
LOC_Os08g10649
Os.23567.1.S1_at--611--211Chr08:6274187..6274211 (25 bp)
ATTTGGGAACTCAACTGCAAGCATT
LOC_Os08g10649
Os.23567.1.S1_at--907--9011Chr08:6274202..6274226 (25 bp)
TGCAAGCATTCAGCGCATGCAGCAT
LOC_Os08g10649
Os.23567.1.S1_at--391--651Chr08:6274218..6274242 (25 bp)
ATGCAGCATGCTCCAACAGCGTGTC
LOC_Os08g10649
Os.23567.1.S1_at--483--3391Chr08:6274234..6274258 (25 bp)
CAGCGTGTCTGGATACAGCGTGTTT
LOC_Os08g10649
Os.23567.1.S1_at--202--171Chr08:6274266..6274290 (25 bp)
ATTTTGAATTGACAGCGCCTTTGCC
LOC_Os08g10649
Os.23567.1.S1_at--475--1651Chr08:6274279..6274303 (25 bp)
AGCGCCTTTGCCGAATCAAGAACAT
LOC_Os08g10649
Os.23567.1.S1_at--615--8311Chr08:6274439..6274463 (25 bp)
GGCTACTGAGGCCATTCGATTTTTT
LOC_Os08g10649
Os.23567.1.S1_at--725--10351Chr08:6274477..6274501 (25 bp)
TTTTCCCTTAGCCTGTATCCTGAAA
LOC_Os08g10649
Target Sequence 
GTCCATATTCAAGCGAGATGTCCATCTGATCCTCCAAGTTAGAGTTGCTAAAAAGAGGAGTGCATGAACAGATTTTAAAG
CTCTTGTATAGACAACCTTTTCCCAATTTGGGAACTCAACTGCAAGCATTCAGCGCATGCAGCATGCTCCAACAGCGTGT
CTGGATACAGCGTGTTTGATGACTATTTTGAATTGACAGCGCCTTTGCCGAATCAAGAACATATGCCCAAGCATTCGAAG
GATGCGTAGTAAAATTTTTCCAATGTTGCAGTTGTAAGGATTTCCTTCTCAGATGCTGTGGGCTGCACAGCCCGAGTATG
TGTATGTTGTGTGCGTGATATAGATATATTTGTACTAGGCTACTGAGGCCATTCGATTTTTTTGGTTCAAATAAGTTTTC
CCTTAGCCTGTATCCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis