Browse Element(s) Details


OsAffx.26573.1.S1_x_at

Description tigr:9632.m05081
TID=OsAffx.26573.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=aminotransferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5245010/11aminotransferase, class III family protein, expressed
LOC_Os08g105101/11aminotransferase, class III family protein, expressed
LOC_Os04g524401/11aminotransferase, class III family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52420OsAffx.4155.1.S1_at11/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.28375.1.S1_s_at2/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.20689.1.A1_x_at1/114+30927916..30935621hypothetical protein
LOC_Os04g52430OsAffx.26572.1.S1_at11/114+30941815..30944324expressed protein
LOC_Os04g52430OsAffx.25952.1.S1_s_at1/114+30941815..30944324expressed protein
LOC_Os04g52440Os.53822.1.S1_x_at11/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52440OsAffx.26573.1.S1_x_at1/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.14095.1.S1_at11/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450OsAffx.26573.1.S1_x_at10/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.53822.1.S1_x_at1/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52460Os.9644.1.S1_at11/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.48346.1.S1_at10/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.38093.1.S1_at3/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52479Os.47617.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479OsAffx.14377.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.3.S1_x_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.4.S1_x_at4/114+30984708..30995628expressed protein
LOC_Os04g52479Os.49445.1.S1_at2/114+30984708..30995628expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0009102biological_processbiotin biosynthesis
GO:0009860biological_processpollen tube growth
GO:0009865biological_processpollen tube adhesion
GO:0042538biological_processhyperosmotic salinity response
GO:0005739cellular_componentmitochondrion
GO:0003867molecular_function4-aminobutyrate transaminase activity
GO:0004015molecular_functionadenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26573.1.S1_x_at--568--1271NONE
AGATCTAGTCTCCATGGCCAAGGCG
NONE
OsAffx.26573.1.S1_x_at--459--2951Chr04:30961586..30961609 (24 bp)
AAGGCGCTTTCATCTGCCTATGTGC
LOC_Os04g52450
OsAffx.26573.1.S1_x_at--22--9191Chr04:30961599..30961623 (25 bp)
TGCCTATGTGCCCATTGGAGCAATT
LOC_Os04g52450
OsAffx.26573.1.S1_x_at--1030--9791Chr04:30961668..30961792 (25 bp)
TAAGCTCGGTTCATTTGCTCATGGA
LOC_Os04g52450
OsAffx.26573.1.S1_x_at--782--7931Chr04:30961790..30961814 (25 bp)
GGATTTACATACTCTGGCCATCCAG
LOC_Os04g52450
OsAffx.26573.1.S1_x_at--1078--1231Chr04:30961813..30961837 (25 bp)
AGTTGCATGTGCTGTCGCCATAGAA
LOC_Os04g52450
OsAffx.26573.1.S1_x_at--965--5372Chr04:30961968..30961992 (25 bp)
GAAGCAAATTTCTCCAAGGTTCCAG
LOC_Os04g52450
OsAffx.26573.1.S1_x_at--734--3191Chr04:30962001..30962025 (25 bp)
CAAGGCCTTTGCAGGAAGTCCGATT
LOC_Os04g52450
OsAffx.26573.1.S1_x_at--15--5211Chr04:30962157..30962181 (25 bp)
GAATTCGCAGACAACAAATCGCCAA
LOC_Os04g52450
OsAffx.26573.1.S1_x_at--1012--4392Chr04:30962177..30962201 (25 bp)
GCCAAATGATCCATTCCCTGCTGAA
LOC_Os04g52450
OsAffx.26573.1.S1_x_at--846--2491Chr04:30962564..30962588 (25 bp)
AACATCATGATGTCACCACCATTGA
LOC_Os04g52450
Target Sequence 
AGATCTAGTCTCCATGGCCAAGGCGCTTTCATCTGCCTATGTGCCCATTGGAGCAATTATGGTTAGCCCAGAAATATCAG
ATGTTATTCATTCTCAGAGCAATAAGCTCGGTTCATTTGCTCATGGATTTACATACTCTGGCCATCCAGTTGCATGTGCT
GTCGCCATAGAAGCCCTGAAAATTTATCAGGAAAGGAACATTCCTGATCATGTGAAGCAAATTTCTCCAAGGTTCCAGGA
GGGAGTCAAGGCCTTTGCAGGAAGTCCGATTGTTGGAGAGATACGTGGTGTAGGGTTGATACTTGGAACTGAATTCGCAG
ACAACAAATCGCCAAATGATCCATTCCCTGCTGAATGGGGCGTCGGCGCGATCTTTGGAGCGGAGTGCCAGAAGCGCGGC
ATGCTGGTTAGAGTTGCTGGAGACAACATCATGATGTCACCACCATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26573.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis