Browse Element(s) Details


Os.47617.1.S1_at

Description gb:AK064014.1
DB_XREF= gi:32974032
TID=Os.47617.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H04, full insert sequence.
FL= gb:AK064014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5247911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52450Os.14095.1.S1_at11/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450OsAffx.26573.1.S1_x_at10/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.53822.1.S1_x_at1/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52460Os.9644.1.S1_at11/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.48346.1.S1_at10/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.38093.1.S1_at3/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52479Os.47617.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479OsAffx.14377.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.3.S1_x_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.4.S1_x_at4/114+30984708..30995628expressed protein
LOC_Os04g52479Os.49445.1.S1_at2/114+30984708..30995628expressed protein
LOC_Os04g52500Os.16854.1.S1_at11/114+30996071..31000524lecithine cholesterol acyltransferase, putative, expressed
LOC_Os04g52510OsAffx.2198.3.S1_at11/114+31004330..31005478hypothetical protein
LOC_Os04g52520OsAffx.4156.1.S1_at11/114+31006042..31011501hypothetical protein
LOC_Os04g52520Os.54371.1.S1_x_at1/114+31006042..31011501hypothetical protein
LOC_Os04g52530Os.17258.1.S1_at7/114+31011862..31012902heavy metal-associated domain containing protein
LOC_Os04g52530OsAffx.23171.1.S1_at3/114+31011862..31012902heavy metal-associated domain containing protein
LOC_Os04g52540Os.50333.1.S1_at11/114+31020119..31024364Piwi domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47617.1.S1_at--278--8671Chr04:30995086..30995110 (25 bp)
TGTGGAAGAGCACCAGTTCATCTCA
LOC_Os04g52479
Os.47617.1.S1_at--1145--6731Chr04:30995101..30995125 (25 bp)
GTTCATCTCAAACTTCGTCGGTATG
LOC_Os04g52479
Os.47617.1.S1_at--1153--6171Chr04:30995155..30995179 (25 bp)
GAGGAGCATCACCAACCTGAACAAC
LOC_Os04g52479
Os.47617.1.S1_at--1012--751Chr04:30995201..30995225 (25 bp)
ATGTCGCTCCATCTGGGTGACCGAG
LOC_Os04g52479
Os.47617.1.S1_at--516--6711Chr04:30995241..30995265 (25 bp)
GTTCGGACTCCGGATCAAGCCTTGA
LOC_Os04g52479
Os.47617.1.S1_at--867--2431Chr04:30995365..30995389 (25 bp)
AAAAGACCTCATATGCAGTTCAGAA
LOC_Os04g52479
Os.47617.1.S1_at--18--6571Chr04:30995476..30995500 (25 bp)
GATTCAGCCCCTTGTAGGATGTTAG
LOC_Os04g52479
Os.47617.1.S1_at--248--10451Chr04:30995497..30995521 (25 bp)
TTAGGTGCTAGTCCTGCAGTTTTGC
LOC_Os04g52479
Os.47617.1.S1_at--797--5031Chr04:30995512..30995536 (25 bp)
GCAGTTTTGCTGTGCTCATGATCGT
LOC_Os04g52479
Os.47617.1.S1_at--223--1391Chr04:30995538..30995562 (25 bp)
AGACCTGATATACACCATTGCCGGA
LOC_Os04g52479
Os.47617.1.S1_at--91--7971Chr04:30995560..30995584 (25 bp)
GGATCCCTTCCTCTTTGTAGAAGAA
LOC_Os04g52479
Target Sequence 
TGTGGAAGAGCACCAGTTCATCTCAAACTTCGTCGGTATGTCGCCCGTGCGCGACGACCAAGACGCTCCGAGGAGCATCA
CCAACCTGAACAACCCCTCCGAGGAAGAACTCGCCATGTCGCTCCATCTGGGTGACCGAGAGCCCAAGCGGCTCCGTTCG
GACTCCGGATCAAGCCTTGACCTGGAGAAATGAAGTGCAAAAAGTGCTGGTTCTGAATTTCTGATTCTGGTTCTTCAGAG
TTTATTGTCATTGTGGACAGCCAAAAGTAGTAGTAGATCAAAAGACCTCATATGCAGTTCAGAAAAATTGAACCTGCAGT
AAGCTTCNGTGAGCTTGAATGGCTTTGGCAAGCATATCATGTAACATGATGNATTATTATTACTACAATTGATTCAGCCC
CTTGTAGGATGTTAGGTGCTAGTCCTGCAGTTTTGCTGTGCTCATGATCGTGAGACCTGATATACACCATTGCCGGATCC
CTTCCTCTTTGTAGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis