Browse Element(s) Details


Os.9644.1.S1_at

Description gb:AU085909
DB_XREF= gi:7332563
DB_XREF=AU085909
CLONE=E2378
TID=Os.9644.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9644 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565741.1 (A.thaliana) putative myosin heavy chain (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5246011/11Viral A-type inclusion protein repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52430OsAffx.26572.1.S1_at11/114+30941815..30944324expressed protein
LOC_Os04g52430OsAffx.25952.1.S1_s_at1/114+30941815..30944324expressed protein
LOC_Os04g52440Os.53822.1.S1_x_at11/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52440OsAffx.26573.1.S1_x_at1/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.14095.1.S1_at11/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450OsAffx.26573.1.S1_x_at10/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.53822.1.S1_x_at1/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52460Os.9644.1.S1_at11/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.48346.1.S1_at10/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.38093.1.S1_at3/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52479Os.47617.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479OsAffx.14377.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.3.S1_x_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.4.S1_x_at4/114+30984708..30995628expressed protein
LOC_Os04g52479Os.49445.1.S1_at2/114+30984708..30995628expressed protein
LOC_Os04g52500Os.16854.1.S1_at11/114+30996071..31000524lecithine cholesterol acyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9644.1.S1_at--455--3251Chr04:30971760..30971784 (25 bp)
CAACGAACAGTGTGGAGGCGTACAA
LOC_Os04g52460
Os.9644.1.S1_at--252--4091Chr04:30971823..30971847 (25 bp)
CGACGTCTAAAAATCAGCTGCTTGA
LOC_Os04g52460
Os.9644.1.S1_at--770--391Chr04:30971835..30971859 (25 bp)
ATCAGCTGCTTGAACAAGAAGTCAA
LOC_Os04g52460
Os.9644.1.S1_at--1117--2731Chr04:30971850..30971874 (25 bp)
AAGAAGTCAAGGACCTGTCTGACAA
LOC_Os04g52460
Os.9644.1.S1_at--96--971Chr04:30971859..30971883 (25 bp)
AGGACCTGTCTGACAAGTTTACAGA
LOC_Os04g52460
Os.9644.1.S1_at--1108--5592Chr04:30971870..30971894 (25 bp)
GACAAGTTTACAGAGCATCAAGAAC
LOC_Os04g52460
Os.9644.1.S1_at--1094--4791Chr04:30971897..30971921 (25 bp)
GCTCATTCGGTTCACGAAAGAAGTC
LOC_Os04g52460
Os.9644.1.S1_at--659--2171Chr04:30971973..30971997 (25 bp)
ACACCCGGACACAGGATCTTGAAAA
LOC_Os04g52460
Os.9644.1.S1_at--758--10731Chr04:30972033..30972057 (25 bp)
TTGAAGCAGACCTAGAACAGTACAG
LOC_Os04g52460
Os.9644.1.S1_at--196--9671Chr04:30972070..30972094 (25 bp)
TCAGCTTTCCGATGAACTAGAAGCA
LOC_Os04g52460
Os.9644.1.S1_at--334--3691Chr04:30972261..30972285 (25 bp)
CTTTGGAAGAGAGGTTGCAGAGCCA
LOC_Os04g52460
Target Sequence 
CAACGAACAGTGTGGAGGCGTACAAAGAAAAGATCAATGAGTTGCNAGCATCTCTGGATTCCNCGACGTCTAAAAATCAG
CTGCTTGAACAAGAAGTCAAGGACCTGTCTGACAAGTTTACAGAGCATCAAGAACANGCTCATTCGGTTCACGAAAGAAG
TCTTGAACTGGAGANCCTGCTTCATACATCGAAGTNTGATGCTGAANTTGCNCACACCCGGACACAGGATCTTGAAAATG
AGCTGANCNCTGCAAATGAAAAGTTCAAGGAGGTTGAAGCAGACCTAGAACAGTACAGGAGCAAGGTTTNTCAGCTTTCC
GATGAACTAGAAGCATNCCAGACAAAAGCAGCTAGTCTTGAAGCTGTGATGGAATCTGCAAGCGAAAAGGAGAAAGAGCT
TGTGGANTCTCTGGGTCAAATTNCTGAANAAAAGAAGAAACTTGAACTACTAGTATTGGAGTATGAAGAGAAGACCGAAG
AATACTTAAAGGAAAAACAATCTTTGGAAGAGAGGTTGCAGAGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis