Browse Element(s) Details


Os.16854.1.S1_at

Description gb:CB661558
DB_XREF= gi:29665283
DB_XREF=OSJNEd04J16.r
CLONE=OSJNEd04J16
TID=Os.16854.1
CNT=28
FEA=FLmRNA
TIER=Stack
STK=9
UG=Os.16854 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027J22, full insert sequence
FL= gb:AK069739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5250011/11lecithine cholesterol acyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52460Os.9644.1.S1_at11/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.48346.1.S1_at10/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.38093.1.S1_at3/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52479Os.47617.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479OsAffx.14377.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.3.S1_x_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.4.S1_x_at4/114+30984708..30995628expressed protein
LOC_Os04g52479Os.49445.1.S1_at2/114+30984708..30995628expressed protein
LOC_Os04g52500Os.16854.1.S1_at11/114+30996071..31000524lecithine cholesterol acyltransferase, putative, expressed
LOC_Os04g52510OsAffx.2198.3.S1_at11/114+31004330..31005478hypothetical protein
LOC_Os04g52520OsAffx.4156.1.S1_at11/114+31006042..31011501hypothetical protein
LOC_Os04g52520Os.54371.1.S1_x_at1/114+31006042..31011501hypothetical protein
LOC_Os04g52530Os.17258.1.S1_at7/114+31011862..31012902heavy metal-associated domain containing protein
LOC_Os04g52530OsAffx.23171.1.S1_at3/114+31011862..31012902heavy metal-associated domain containing protein
LOC_Os04g52540Os.50333.1.S1_at11/114+31020119..31024364Piwi domain containing protein, expressed
LOC_Os04g52550Os.55120.1.S1_at10/114+31025382..31030546Piwi domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004607molecular_functionphosphatidylcholine-sterol O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16854.1.S1_at--479--10711Chr04:30999823..30999847 (25 bp)
TTGCTGCAGACCACCGAGGAATCGT
LOC_Os04g52500
Os.16854.1.S1_at--754--8651Chr04:30999849..30999873 (25 bp)
TGTGATCGTCACGTGTTCCGGATAA
LOC_Os04g52500
Os.16854.1.S1_at--1157--6691Chr04:30999863..30999887 (25 bp)
GTTCCGGATAATTCAGCACTGGCTC
LOC_Os04g52500
Os.16854.1.S1_at--570--3971Chr04:30999893..30999917 (25 bp)
CGGTGAGCCTGACCCATTCTACGAT
LOC_Os04g52500
Os.16854.1.S1_at--1100--411Chr04:31000014..31000038 (25 bp)
ATCATCTCCCATCGCGATGACGAAA
LOC_Os04g52500
Os.16854.1.S1_at--581--9251Chr04:31000061..31000085 (25 bp)
TCCTATGTTCAACACGCTATCGGCG
LOC_Os04g52500
Os.16854.1.S1_at--220--4611Chr04:31000125..31000149 (25 bp)
GCGACGATCTTTGTTCATCCAGAGA
LOC_Os04g52500
Os.16854.1.S1_at--941--1211Chr04:31000172..31000196 (25 bp)
AGTTAGGGCAGTTGGAGTCACCCAT
LOC_Os04g52500
Os.16854.1.S1_at--750--6091Chr04:31000186..31000210 (25 bp)
GAGTCACCCATGACGGCTAGTCAAG
LOC_Os04g52500
Os.16854.1.S1_at--890--4851Chr04:31000201..31000225 (25 bp)
GCTAGTCAAGCCAGTCATACGAAAA
LOC_Os04g52500
Os.16854.1.S1_at--607--7911Chr04:31000231..31000255 (25 bp)
GGTTGTCAACTAGCTAGTCTGCACA
LOC_Os04g52500
Target Sequence 
TTGCTGCAGACCACCGAGGAATCGTCTGTGATCGTCACGTGTTCCGGATAATTCAGCACTGGCTCCATGCCGGTGAGCCT
GACCCATTCTACGATCCCCTCAACGACTACGTCATACTCCCAACAGCCTTCGAGATCGAGAAGTACCACGAGAAACACGG
GGATATCACATCGGTTAGAGAGGACTGGGAGATCATCTCCCATCGCGATGACGAAAGCAAGAGGCCAGCCGAGCTTCCTC
CTATGTTCAACACGCTATCGGCGTCCCGNGAGGGTGAAGACGGCTCGCTGGAAGAGGCGCAGGCGACGATCTTTGTTCAT
CCAGAGAGCAAAGGGAGGCAGCATGTGGAAGTTAGGGCAGTTGGAGTCACCCATGACGGCTAGTCAAGCCAGTCATACGA
AAACACACGGTTGTCAACTAGCTAGTCTGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis