Browse Element(s) Details


Os.55120.1.S1_at

Description gb:AK107521.1
DB_XREF= gi:32992730
TID=Os.55120.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-F09, full insert sequence.
FL= gb:AK107521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5255010/11Piwi domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52500Os.16854.1.S1_at11/114+30996071..31000524lecithine cholesterol acyltransferase, putative, expressed
LOC_Os04g52510OsAffx.2198.3.S1_at11/114+31004330..31005478hypothetical protein
LOC_Os04g52520OsAffx.4156.1.S1_at11/114+31006042..31011501hypothetical protein
LOC_Os04g52520Os.54371.1.S1_x_at1/114+31006042..31011501hypothetical protein
LOC_Os04g52530Os.17258.1.S1_at7/114+31011862..31012902heavy metal-associated domain containing protein
LOC_Os04g52530OsAffx.23171.1.S1_at3/114+31011862..31012902heavy metal-associated domain containing protein
LOC_Os04g52540Os.50333.1.S1_at11/114+31020119..31024364Piwi domain containing protein, expressed
LOC_Os04g52550Os.55120.1.S1_at10/114+31025382..31030546Piwi domain containing protein, expressed
LOC_Os04g52560OsAffx.14378.1.S1_at11/114+31031109..31034974transposon protein, putative, unclassified, expressed
LOC_Os04g52560Os.53329.1.S1_x_at10/114+31031109..31034974transposon protein, putative, unclassified, expressed
LOC_Os04g52570Os.54626.1.S1_at11/114+31035777..31038868expressed protein
LOC_Os04g52580OsAffx.26575.1.S1_at11/114+31041029..31043375TPR Domain containing protein
LOC_Os04g52590OsAffx.14379.1.S1_x_at11/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52590Os.18323.1.S1_at11/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52590OsAffx.15019.1.S1_s_at1/114+31044044..31051830Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0040034biological_processregulation of development, heterochronic
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55120.1.S1_at--340--571Chr04:31030232..31030256 (25 bp)
ATCCTCATCTGAGGGCATGACGGCG
LOC_Os04g52550
Os.55120.1.S1_at--753--2051NONE
ACTTCAGGGAGTTGGCTCCGATGCA
NONE
Os.55120.1.S1_at--1130--8931Chr04:31030368..31030392 (25 bp)
TGACGACAGCTTTTCGCCGCATATG
LOC_Os04g52550
Os.55120.1.S1_at--743--271Chr04:31030388..31030412 (25 bp)
ATATGGTCTCTCGTTGCCAGGTACT
LOC_Os04g52550
Os.55120.1.S1_at--258--1031Chr04:31030406..31030430 (25 bp)
AGGTACTCCTCGTATGGTCCTGGAA
LOC_Os04g52550
Os.55120.1.S1_at--958--7791Chr04:31030421..31030445 (25 bp)
GGTCCTGGAACTTGCGTTTGATTTT
LOC_Os04g52550
Os.55120.1.S1_at--84--10391Chr04:31030442..31030466 (25 bp)
TTTTCTGGTTGTGATACCTGTCCGT
LOC_Os04g52550
Os.55120.1.S1_at--672--8691Chr04:31030466..31030490 (25 bp)
TGTCCCGGTGTCTGTTCTTTAACTG
LOC_Os04g52550
Os.55120.1.S1_at--1052--9531Chr04:31030481..31030505 (25 bp)
TCTTTAACTGCCTGGAGTCTCTCAT
LOC_Os04g52550
Os.55120.1.S1_at--883--7151Chr04:31030497..31030521 (25 bp)
GTCTCTCATGTCTTTGGGTGGTTTA
LOC_Os04g52550
Os.55120.1.S1_at--707--9231Chr04:31030522..31030546 (25 bp)
TCCATAGTAAATTTTTGTCCGTGTC
LOC_Os04g52550
Target Sequence 
ATCCTCATCTGAGGGCATGACGGCGTCCCAGCCCCAGGCGCCGGCGGCGGAGGCGGCATCCTCCTCCGCGGGAGCTGCCG
ACTTCAGGGAGTTGGCTCCGATGCACGGGGATCTGTTGAACAACATGTTCTTCCTCTGACGACAGCTTTTCGCCGCATAT
GGTCTCTCGTTGCCAGGTACTCCTCGTATGGTCCTGGAACTTGCGTTTGATTTTCTGGTTGTGATACCTGTCCGTGTCCC
GGTGTCTGTTCTTTAACTGCCTGGAGTCTCTCATGTCTTTGGGTGGTTTATCCATAGTAAATTTTTGTCCGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis