Browse Element(s) Details


OsAffx.14378.1.S1_at

Description tigr:9632.m05092
TID=OsAffx.14378.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5256011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52520OsAffx.4156.1.S1_at11/114+31006042..31011501hypothetical protein
LOC_Os04g52520Os.54371.1.S1_x_at1/114+31006042..31011501hypothetical protein
LOC_Os04g52530Os.17258.1.S1_at7/114+31011862..31012902heavy metal-associated domain containing protein
LOC_Os04g52530OsAffx.23171.1.S1_at3/114+31011862..31012902heavy metal-associated domain containing protein
LOC_Os04g52540Os.50333.1.S1_at11/114+31020119..31024364Piwi domain containing protein, expressed
LOC_Os04g52550Os.55120.1.S1_at10/114+31025382..31030546Piwi domain containing protein, expressed
LOC_Os04g52560OsAffx.14378.1.S1_at11/114+31031109..31034974transposon protein, putative, unclassified, expressed
LOC_Os04g52560Os.53329.1.S1_x_at10/114+31031109..31034974transposon protein, putative, unclassified, expressed
LOC_Os04g52570Os.54626.1.S1_at11/114+31035777..31038868expressed protein
LOC_Os04g52580OsAffx.26575.1.S1_at11/114+31041029..31043375TPR Domain containing protein
LOC_Os04g52590OsAffx.14379.1.S1_x_at11/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52590Os.18323.1.S1_at11/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52590OsAffx.15019.1.S1_s_at1/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52600Os.27773.1.S1_at5/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600OsAffx.4157.1.S1_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600OsAffx.4157.1.S1_x_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600Os.27084.2.S1_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600Os.27084.2.S1_x_at1/114+31055719..31063217Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14378.1.S1_at--116--171Chr04:31032081..31032105 (25 bp)
ATTTTGCAATCTACACTGGCGAATA
LOC_Os04g52560
OsAffx.14378.1.S1_at--862--4571Chr04:31032063..31032087 (25 bp)
GCGAATAAGTCATCCGTAGGCCCTT
LOC_Os04g52560
OsAffx.14378.1.S1_at--647--6811Chr04:31032048..31032072 (25 bp)
GTAGGCCCTTCCATTAAGAACCAGT
LOC_Os04g52560
OsAffx.14378.1.S1_at--569--2931Chr04:31031799..31031823 (25 bp)
AAGGCACCCTGATGAAGCAGCCACT
LOC_Os04g52560
OsAffx.14378.1.S1_at--434--2271Chr04:31031709..31031733 (25 bp)
AAATCAGTTCCTCCCAGATCAATTA
LOC_Os04g52560
OsAffx.14378.1.S1_at--1055--10171Chr04:31031578..31031602 (25 bp)
TATACTTGGTCAGAGCTATGGGCTT
LOC_Os04g52560
OsAffx.14378.1.S1_at--1119--3671Chr04:31031563..31031587 (25 bp)
CTATGGGCTTGGTACCTCAGAGAAT
LOC_Os04g52560
OsAffx.14378.1.S1_at--966--5231Chr04:31031441..31031548 (25 bp)
GAATCAGTTTGGTCAGGCTTCCTCA
LOC_Os04g52560
OsAffx.14378.1.S1_at--1001--9011Chr04:31031406..31031430 (25 bp)
TGCAACAGCAGGCATTTCCCGGAAA
LOC_Os04g52560
OsAffx.14378.1.S1_at--387--111Chr04:31031205..31031399 (25 bp)
ATTAACCCAAGGCTATCCTAGTGAT
LOC_Os04g52560
OsAffx.14378.1.S1_at--161--7611Chr04:31031158..31031182 (25 bp)
GGGCAAATCCCCAGATGGAGCATCA
LOC_Os04g52560
Target Sequence 
ATTTTGCAATCTACACTGGCGAATAAGTCATCCGTAGGCCCTTCCATTAAGAACCAGTTAACTAGTATGGTTCAGAATGA
ATATCTCCTTAATAGTAGCAATGAAGTTGAGAAATCTACTGGAAAGAAGAAGACTGAAGTTTATCGCCATAAAAGTGCTG
TGGTAACTAATAAAATGCAGAAAACAAGAAAAGACACAAGGCACCCTGATGAAGCAGCCACTGGAACAAGAGATGGAGAA
CTGAATATGACACCAGACAACAGGCAGTCAGAAGCAAGGAATTCTCCAAATCAGTTCCTCCCAGATCAATTAATGCAGGG
GCATTATATACTTGGTCAGAGCTATGGGCTTGGTACCTCAGAGAATCTTCATAACAATTTGAATCAGTTTGGTCAGGCTT
CCTCACTTCCAACCATGCAACAGCAGGCATTTCCCGGAAACAATCAATTAACCCAAGGCTATCCTAGTGATATGCATGCA
CTACAGTTTGTAGGGGCAAATCCCCAGATGGAGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis