Browse Element(s) Details


Os.27773.1.S1_at

Description gb:CR290000
DB_XREF= gi:44676566
DB_XREF=CR290000
CLONE=y736a12p3
TID=Os.27773.1
CNT=13
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27773 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564709.1 (A.thaliana) predicted protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g526005/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52560OsAffx.14378.1.S1_at11/114+31031109..31034974transposon protein, putative, unclassified, expressed
LOC_Os04g52560Os.53329.1.S1_x_at10/114+31031109..31034974transposon protein, putative, unclassified, expressed
LOC_Os04g52570Os.54626.1.S1_at11/114+31035777..31038868expressed protein
LOC_Os04g52580OsAffx.26575.1.S1_at11/114+31041029..31043375TPR Domain containing protein
LOC_Os04g52590OsAffx.14379.1.S1_x_at11/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52590Os.18323.1.S1_at11/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52590OsAffx.15019.1.S1_s_at1/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52600Os.27773.1.S1_at5/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600OsAffx.4157.1.S1_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600OsAffx.4157.1.S1_x_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600Os.27084.2.S1_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600Os.27084.2.S1_x_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52614OsAffx.4157.1.S1_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614OsAffx.4157.1.S1_x_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27242.1.S1_x_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27242.1.S1_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.53743.1.S1_at10/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.54061.1.S1_x_at10/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27084.2.S1_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27084.2.S1_x_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.17112.1.S1_at1/114+31066297..31088605Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27773.1.S1_at--1135--7191Chr04:31055895..31055919 (25 bp)
GTCGTGTCAATGCTCACCGGCGACA
LOC_Os04g52600
Os.27773.1.S1_at--1144--5631Chr04:31055874..31055898 (25 bp)
GACACCGAGGTCACCGATGTGTTGA
LOC_Os04g52600
Os.27773.1.S1_at--951--4051Chr04:31055860..31055884 (25 bp)
CGATGTGTTGATGAAGCCGAGCTAC
LOC_Os04g52600
Os.27773.1.S1_at--349--7231Chr04:31055749..31055773 (25 bp)
GTCGCAGCAAGCCTCGTCGGTGTTC
LOC_Os04g52600
Os.27773.1.S1_at--911--7191Chr04:31055734..31055758 (25 bp)
GTCGGTGTTCTTGAACTCCATCATC
LOC_Os04g52600
Os.27773.1.S1_at--973--151Chr04:31055695..31055719 (25 bp)
ATTTTCACGCCGGTGCTTGATCGGA
NONE
Os.27773.1.S1_at--882--7951Chr04:31055673..31055697 (25 bp)
GGATCAACTTTTCCTCAAGTGGCAG
NONE
Os.27773.1.S1_at--857--6451Chr04:31055646..31055670 (25 bp)
GATAATCTCGTCTTGTGGAGCTGTG
NONE
Os.27773.1.S1_at--1041--10391Chr04:31055575..31055599 (25 bp)
TTTTGCAGTGCAGGTCGTCGTCTCG
NONE
Os.27773.1.S1_at--541--10351Chr04:31055538..31055562 (25 bp)
TTTTCTTTACAGTTTGCCGGTTGCG
NONE
Os.27773.1.S1_at--619--5231Chr04:31055444..31055468 (25 bp)
GAATAGCTTATGTGCTTTGCCCTAT
NONE
Target Sequence 
GTCGTGTCAATGCTCACCGGCGACACCGAGGTCACCGATGTGTTGATGAAGCCGAGCTACATCACCGAGTGGCAGATCAA
GGGCGGCAACACCAGCTTCGCCAACAGCGCCGTCCGCGGGCAGTCGAGCTCGGCGCCAGGATCGACGTCGCAGCAAGCCT
CGTCGGTGTTCTTGAACTCCATCATCCAGGAAGGCCGGTGATTTTCACGCCGGTGCTTGATCGGATCAACTTTTCCTCAA
GTGGCAGATGATAATCTCGTCTTGTGGAGCTGTGATTGTGAATACACGTTGCGAAGGGCAAATGGTGTCAAGACTGTCAG
TTTTGCAGTGCAGGTCGTCGTCTCGTTTTTCTTTTTTTTTTCTTTACAGTTTGCCGGTTGCGTTTTTAAAAATTATGTTC
AGTTTGTTTCATACCTGTACAGTGTAAGTTTGAGTATATATATTTTTGATCGAATAGCTTATGTGCTTTGCCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis