Browse Element(s) Details


Os.18323.1.S1_at

Description gb:AK111453.1
DB_XREF= gi:32996662
TID=Os.18323.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-C01, full insert sequence.
FL= gb:AK111453.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5259011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52540Os.50333.1.S1_at11/114+31020119..31024364Piwi domain containing protein, expressed
LOC_Os04g52550Os.55120.1.S1_at10/114+31025382..31030546Piwi domain containing protein, expressed
LOC_Os04g52560OsAffx.14378.1.S1_at11/114+31031109..31034974transposon protein, putative, unclassified, expressed
LOC_Os04g52560Os.53329.1.S1_x_at10/114+31031109..31034974transposon protein, putative, unclassified, expressed
LOC_Os04g52570Os.54626.1.S1_at11/114+31035777..31038868expressed protein
LOC_Os04g52580OsAffx.26575.1.S1_at11/114+31041029..31043375TPR Domain containing protein
LOC_Os04g52590OsAffx.14379.1.S1_x_at11/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52590Os.18323.1.S1_at11/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52590OsAffx.15019.1.S1_s_at1/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52600Os.27773.1.S1_at5/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600OsAffx.4157.1.S1_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600OsAffx.4157.1.S1_x_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600Os.27084.2.S1_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600Os.27084.2.S1_x_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52614OsAffx.4157.1.S1_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614OsAffx.4157.1.S1_x_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27242.1.S1_x_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27242.1.S1_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.53743.1.S1_at10/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.54061.1.S1_x_at10/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27084.2.S1_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27084.2.S1_x_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.17112.1.S1_at1/114+31066297..31088605Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18323.1.S1_at--1142--2891Chr04:31044594..31044618 (25 bp)
AAGGCTTGGAGCTAAATTCCCGGCT
LOC_Os04g52590
Os.18323.1.S1_at--845--8311Chr04:31044573..31044597 (25 bp)
GGCTCATACAAAGGCGGTCTCATCA
LOC_Os04g52590
Os.18323.1.S1_at--147--7171Chr04:31044557..31044581 (25 bp)
GTCTCATCACTTGCTGACTTGGGTA
LOC_Os04g52590
Os.18323.1.S1_at--1029--6391Chr04:31044505..31044529 (25 bp)
GATCTAAGGCATCTACTGCCTCCAA
LOC_Os04g52590
Os.18323.1.S1_at--289--9191Chr04:31044489..31044513 (25 bp)
TGCCTCCAATCCGTTCTAAAATACT
LOC_Os04g52590
Os.18323.1.S1_at--236--5291Chr04:31044456..31044480 (25 bp)
GAATGTGATTTAACTCATCCTAAGA
LOC_Os04g52590
Os.18323.1.S1_at--659--6571Chr04:31044405..31044429 (25 bp)
GATTCGTTATCTTTAGGATCGGTCA
LOC_Os04g52590
Os.18323.1.S1_at--126--7971Chr04:31044390..31044414 (25 bp)
GGATCGGTCAAATCACATTCTAGGT
LOC_Os04g52590
Os.18323.1.S1_at--21--6971Chr04:31044344..31044368 (25 bp)
GTAGCAGTCTGGTATGCCCGTGCAT
LOC_Os04g52590
Os.18323.1.S1_at--1080--1051Chr04:31044131..31044155 (25 bp)
AGGGTGTGCCCTTTTCACAGTACAC
LOC_Os04g52590
Os.18323.1.S1_at--504--7031Chr04:31044112..31044136 (25 bp)
GTACACACCACGCAGATGAAGGGCT
LOC_Os04g52590
Target Sequence 
AAGGCTTGGAGCTAAATTCCCGGCTCATACAAAGGCGGTCTCATCACTTGCTGACTTGGGTAGGAGGAAGAGGGAGTAGG
TGATTGAACGATCTAAGGCATCTACTGCCTCCAATCCGTTCTAAAATACTGTAATTTAGAATGTGATTTAACTCATCCTA
AGATAATGAATCGAAATAGAGATTGTCTAGATTCGTTATCTTTAGGATCGGTCAAATCACATTCTAGGTACAATATTTTG
GAACGAAGTAGTAGCAGTCTGGTATGCCCGTGCATCACGCACGGGANCACATGGTGTTANAGGTGTTTGGGCANCGCTTC
CTCGCTGGAANTTGGTCGANCCGTGTTGTTGGGTTGACCTAGGTGGTGTGAGTTCATGANCGTGCCNCGTGCGCTTTGCT
TGCTTAANTTCCTTCCCTTTGGCCTTGTTCTTTTGTTTCCCTTTTTCTCCTCCAATGCGCAANAGGGTGTGCCCTTTTCA
CAGTACACACCACGCAGATGAAGGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis