Browse Element(s) Details


Os.53329.1.S1_x_at

Description gb:AK072027.1
DB_XREF= gi:32982050
TID=Os.53329.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53329 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106I23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106I23, full insert sequence.
FL= gb:AK072027.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5256010/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52520OsAffx.4156.1.S1_at11/114+31006042..31011501hypothetical protein
LOC_Os04g52520Os.54371.1.S1_x_at1/114+31006042..31011501hypothetical protein
LOC_Os04g52530Os.17258.1.S1_at7/114+31011862..31012902heavy metal-associated domain containing protein
LOC_Os04g52530OsAffx.23171.1.S1_at3/114+31011862..31012902heavy metal-associated domain containing protein
LOC_Os04g52540Os.50333.1.S1_at11/114+31020119..31024364Piwi domain containing protein, expressed
LOC_Os04g52550Os.55120.1.S1_at10/114+31025382..31030546Piwi domain containing protein, expressed
LOC_Os04g52560OsAffx.14378.1.S1_at11/114+31031109..31034974transposon protein, putative, unclassified, expressed
LOC_Os04g52560Os.53329.1.S1_x_at10/114+31031109..31034974transposon protein, putative, unclassified, expressed
LOC_Os04g52570Os.54626.1.S1_at11/114+31035777..31038868expressed protein
LOC_Os04g52580OsAffx.26575.1.S1_at11/114+31041029..31043375TPR Domain containing protein
LOC_Os04g52590OsAffx.14379.1.S1_x_at11/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52590Os.18323.1.S1_at11/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52590OsAffx.15019.1.S1_s_at1/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52600Os.27773.1.S1_at5/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600OsAffx.4157.1.S1_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600OsAffx.4157.1.S1_x_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600Os.27084.2.S1_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600Os.27084.2.S1_x_at1/114+31055719..31063217Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53329.1.S1_x_at--369--6391Chr04:31032810..31032834 (25 bp)
GATCGGGAAAATTGGGCCTTGCCAT
LOC_Os04g52560
Os.53329.1.S1_x_at--1088--7551Chr04:31032797..31032821 (25 bp)
GGGCCTTGCCATATAACCGGCAAAT
LOC_Os04g52560
Os.53329.1.S1_x_at--882--2391Chr04:31032737..31032761 (25 bp)
AAACTTCTTGCGTTGGGCTGAGAGA
LOC_Os04g52560
Os.53329.1.S1_x_at--129--1271Chr04:31032635..31032659 (25 bp)
AGATACAAGCTGATTACCAAGCCAG
LOC_Os04g52560
Os.53329.1.S1_x_at--858--2731Chr04:31032598..31032622 (25 bp)
AAGAATATCTCTGCCACTGCTATGG
LOC_Os04g52560
Os.53329.1.S1_x_at--212--8511Chr04:31032576..31032600 (25 bp)
TGGCAAGCTGCAAAAGTGTATACAC
LOC_Os04g52560
Os.53329.1.S1_x_at--851--7431Chr04:31032561..31032585 (25 bp)
GTGTATACACCAATCATCTTTGAGT
LOC_Os04g52560
Os.53329.1.S1_x_at--169--1211Chr04:31032482..31032506 (25 bp)
AGTTTGGCTCTCTTTCTGAGTACAT
LOC_Os04g52560
Os.53329.1.S1_x_at--319--1551Chr04:31032428..31032452 (25 bp)
AGCTTGTGCGGTTTGACTCATCAGA
LOC_Os04g52560
Os.53329.1.S1_x_at--70--5711Chr04:31032414..31032438 (25 bp)
GACTCATCAGATGGCACAGTTGCAT
LOC_Os04g52560
Os.53329.1.S1_x_at--937--10471NONE
TTAAAGAGTCCAGGCCGCAGAATTT
NONE
Target Sequence 
GATCGGGAAAATTGGGCCTTGCCATATAACCGGCAAATATTCTTTGGGGACATTAAAGGGATGTTACAAGTAGAAACTTC
TTGCGTTGGGCTGAGAGAGTTCTTGGATTGTGAGAAAGATCTCTCTAAATTTTTTATGTTCTTTGAAAGCTCAATGGAGA
AGAGGAGGCAAGAAGAGATACAAGCTGATTACCAAGCCAGCGAAGGGGCACCAAGAATATCTCTGCCACTGCTATGGCAA
GCTGCAAAAGTGTATACACCAATCATCTTTGAGTTATTTAGAAAGGAATATGAACTGTGTATGGACTGTATGGCTTATAG
TTGTGGGGAGTTTGGCTCTCTTTCTGAGTACATGATCACTGTTAAGAATAAAACTAAAGACCAGCTTGTGCGGTTTGACT
CATCAGATGGCACAGTTGCATGNACTTGTAAAAAATTTGAAAATGCTGGAATATTATGNTGCCATATATTAAAGGNATAT
GAGCTGAGGAATGTTAAAGAGTCCAGGCCGCAGAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53329.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis