Browse Element(s) Details


OsAffx.23171.1.S1_at

Description tigr:9629.m00915
TID=OsAffx.23171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0966011/11heavy metal-associated domain containing protein
LOC_Os04g525303/11heavy metal-associated domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09640Os.623.1.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.3.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.1.S1_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.2.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09650OsAffx.10983.1.S1_at1/111+4972893..4973387hypothetical protein
LOC_Os01g09660OsAffx.23171.1.S1_at11/111+4975900..4976830heavy metal-associated domain containing protein
LOC_Os01g09670Os.625.1.S1_at11/111+4978984..4981945Pollen-specific protein SF21, putative, expressed
LOC_Os01g09680NANA1+4984506..4985003hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_x_at9/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.2.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09700Os.45926.1.S1_s_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700Os.6034.1.S1_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700OsAffx.14625.1.S1_x_at5/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23171.1.S1_at--884--4432Chr04:31012062..31012249 (25 bp)
GCCATAAGCCTGAAAGGCGTGCTGA
LOC_Os04g52530
OsAffx.23171.1.S1_at--797--7291Chr01:4976457..4976481 (25 bp)
GTGCTGAGGACTGAGATCAACCCGT
LOC_Os01g09660
OsAffx.23171.1.S1_at--616--1272Chr04:31012256..31012280 (25 bp)
AGATCAACCCGTCGCTCGACAAGGT
LOC_Os04g52530
OsAffx.23171.1.S1_at--374--7232Chr04:31012266..31012290 (25 bp)
GTCGCTCGACAAGGTGACCGTCGTC
LOC_Os04g52530
OsAffx.23171.1.S1_at--638--2151Chr01:4976399..4976423 (25 bp)
ACAGCAGGGTGCTCGTCCAGAAGCT
LOC_Os01g09660
OsAffx.23171.1.S1_at--728--7271Chr01:4976385..4976409 (25 bp)
GTCCAGAAGCTCTCGAAGGTCGGCA
LOC_Os01g09660
OsAffx.23171.1.S1_at--1023--1371Chr01:4976249..4976273 (25 bp)
AGAGCGCGCGCAAAGACGAAGGCAA
LOC_Os01g09660
OsAffx.23171.1.S1_at--199--2311Chr01:4976217..4976241 (25 bp)
AAAGGCAACAAGTCGCCAGCGACGG
LOC_Os01g09660
OsAffx.23171.1.S1_at--1058--2331Chr01:4976091..4976115 (25 bp)
AAAGACGCCACCACCAAGAGCAGCG
LOC_Os01g09660
OsAffx.23171.1.S1_at--256--5071Chr01:4975956..4975980 (25 bp)
GCAGCGAATGCGACGCCGTACTACG
LOC_Os01g09660
OsAffx.23171.1.S1_at--598--9951Chr01:4975935..4975959 (25 bp)
TACGCCGGAGGCTACTACCCGATGC
LOC_Os01g09660
Target Sequence 
GCCATAAGCCTGAAAGGCGTGCTGAGGACTGAGATCAACCCGTCGCTCGACAAGGTGACCGTCGTCGGTGACGTGGACAG
CAGGGTGCTCGTCCAGAAGCTCTCGAAGGTCGGCAAGATCGCCGAGGTGATGGCGCCGCCGCCGCCGTCACCGGCTGCGC
CTTCGGAAGAAGGCAAGAAGAGCAACAGCAATGGCGGCGAGAAGCCGACCTCGCCGGCGGACGAGAAGAGCGCGCGCAAA
GACGAAGGCAAGGACGGCAAAGGCAACAAGTCGCCAGCGACGGCGGCGGCGTGCAAGCAGGAATGCAGCAAGTGCACGGC
CAGGAAGGAAGCCGCCACACGCGCCGACGAGGCTGGCCGCGCCGGTGGGAAGACGGCATCGTCCAAAGACGCCACCACCA
AGAGCAGCGGCGACGGCGACAAATCTGAACCAGCGGCGGTGGCAGTGGAGTACCAGTACCACCACCACTACAACTGGGCG
GAGCCGGCCATGGTGGTGCCGGTTCACCTCCCGTACTTCGCAGCGAATGCGACGCCGTACTACGCCGGAGGCTACTACCC
GATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis