Browse Element(s) Details


OsAffx.21894.1.S1_at

Description gb:NM_189684.1
DB_XREF= gi:34906451
GEN=P0671B11.18
TID=OsAffx.21894.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0671B11.18 (P0671B11.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g096908/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09640Os.623.1.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.3.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.1.S1_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.2.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09650OsAffx.10983.1.S1_at1/111+4972893..4973387hypothetical protein
LOC_Os01g09660OsAffx.23171.1.S1_at11/111+4975900..4976830heavy metal-associated domain containing protein
LOC_Os01g09670Os.625.1.S1_at11/111+4978984..4981945Pollen-specific protein SF21, putative, expressed
LOC_Os01g09680NANA1+4984506..4985003hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_x_at9/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.2.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09700Os.45926.1.S1_s_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700Os.6034.1.S1_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700OsAffx.14625.1.S1_x_at5/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09710OsAffx.22161.1.S1_at11/111+5006850..5009197hypothetical protein
LOC_Os01g09720NANA1+5011411..5012058Dof domain, zinc finger family protein
LOC_Os01g09730Os.31630.1.S1_x_at11/111+5013081..5015453expressed protein
LOC_Os01g09730Os.31630.2.S1_at11/111+5013081..5015453expressed protein
LOC_Os01g09740Os.31630.3.S1_at11/111+5014695..5016887F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21894.1.S1_at--167--3531Chr01:4988798..4988818 (21 bp)
CATCGGGTGGTTTGGTTTGACGAAG
LOC_Os01g09690
OsAffx.21894.1.S1_at--767--5791Chr01:4988812..4988836 (25 bp)
GACGAAGTTTGTGGAACTAGCAGCT
LOC_Os01g09690
OsAffx.21894.1.S1_at--1029--1191Chr01:4988817..4988841 (25 bp)
AGTTTGTGGAACTAGCAGCTTCAAT
LOC_Os01g09690
OsAffx.21894.1.S1_at--181--8651Chr01:4988821..4988845 (25 bp)
TGTGGAACTAGCAGCTTCAATGCAT
LOC_Os01g09690
OsAffx.21894.1.S1_at--670--8171Chr01:4988824..4988848 (25 bp)
GGAACTAGCAGCTTCAATGCATGAA
LOC_Os01g09690
OsAffx.21894.1.S1_at--742--10011Chr01:4988829..4988853 (25 bp)
TAGCAGCTTCAATGCATGAAGAATT
LOC_Os01g09690
OsAffx.21894.1.S1_at--45--5211Chr01:4988849..4988873 (25 bp)
GAATTGGTTTTTCAGAACTTGGACA
LOC_Os01g09690
OsAffx.21894.1.S1_at--795--8571Chr01:4988853..4988877 (25 bp)
TGGTTTTTCAGAACTTGGACAAGTT
LOC_Os01g09690
OsAffx.21894.1.S1_at--340--2611NONE
AAGTTTGAAAAATCATCCGTCGCCG
NONE
OsAffx.21894.1.S1_at--402--6851NONE
GTTTGAAAAATCATCCGTCGCCGAT
NONE
OsAffx.21894.1.S1_at--989--5471NONE
GAAAAATCATCCGTCGCCGATTTTC
NONE
Target Sequence 
CATCGGGTGGTTTGGTTTGACGAAGTTTGTGGAACTAGCAGCTTCAATGCATGAAGAATTGGTTTTTCAGAACTTGGACA
AGTTTGAAAAATCATCCGTCGCCGATTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis