Browse Element(s) Details


Os.31630.3.S1_at

Description gb:NM_188210.1
DB_XREF= gi:34903503
GEN=P0001B06.4
TID=Os.31630.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0671B11.26 (P0671B11.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0001B06.4 (P0001B06.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0974011/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09690OsAffx.21894.1.S1_x_at9/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.2.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09700Os.45926.1.S1_s_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700Os.6034.1.S1_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700OsAffx.14625.1.S1_x_at5/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09710OsAffx.22161.1.S1_at11/111+5006850..5009197hypothetical protein
LOC_Os01g09720NANA1+5011411..5012058Dof domain, zinc finger family protein
LOC_Os01g09730Os.31630.1.S1_x_at11/111+5013081..5015453expressed protein
LOC_Os01g09730Os.31630.2.S1_at11/111+5013081..5015453expressed protein
LOC_Os01g09740Os.31630.3.S1_at11/111+5014695..5016887F-box family protein, putative, expressed
LOC_Os01g09750Os.24087.1.S1_at11/111+5017890..502250623S rRNA methyltransferase RumA family protein, expressed
LOC_Os01g09750OsAffx.22118.1.S1_at1/111+5017890..502250623S rRNA methyltransferase RumA family protein, expressed
LOC_Os01g09760Os.45934.3.S1_x_at11/111+5026959..5033985DIRP family protein, expressed
LOC_Os01g09760Os.45934.3.S1_at11/111+5026959..5033985DIRP family protein, expressed
LOC_Os01g09770Os.45934.1.S1_at6/111+5034225..5037500expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31630.3.S1_at--636--11Chr01:5015594..5015618 (25 bp)
ATTAACAATCCGTGCGCCTAACTTG
LOC_Os01g09740
Os.31630.3.S1_at--1087--9811Chr01:5015576..5015600 (25 bp)
TAACTTGGTTCGTCTTGAGCTGAAA
LOC_Os01g09740
Os.31630.3.S1_at--233--6511Chr01:5015539..5015563 (25 bp)
GATATGCTCATTTTGGATACCCCAT
LOC_Os01g09740
Os.31630.3.S1_at--486--1671Chr01:5015465..5015489 (25 bp)
AGCCGATGGCCTTGTGAGTTTGAAA
LOC_Os01g09740
Os.31630.3.S1_at--884--4771Chr01:5015357..5015381 (25 bp)
GCTGCCCACTTCTACAAACAAATAT
LOC_Os01g09740
Os.31630.3.S1_at--1075--6071Chr01:5015308..5015332 (25 bp)
GAGTATCTTCTTCAGCTGTTTGCCG
LOC_Os01g09740
Os.31630.3.S1_at--913--8771Chr01:5015292..5015316 (25 bp)
TGTTTGCCGGCATCAGCGAAGTCAA
LOC_Os01g09740
Os.31630.3.S1_at--431--8471Chr01:5015265..5015289 (25 bp)
TGGCCCCTCGGTTTTCATGTGAAAT
LOC_Os01g09740
Os.31630.3.S1_at--1032--8871Chr01:5015193..5015217 (25 bp)
TGAGGAGACTCCTGTTTCATCTACC
LOC_Os01g09740
Os.31630.3.S1_at--90--9011Chr01:5015163..5015187 (25 bp)
TGAAGGATGTTCCTCATCTTGCACC
LOC_Os01g09740
Os.31630.3.S1_at--1152--3071Chr01:5015131..5015155 (25 bp)
AATAACTGTGCTCCATCTTGCGAGG
LOC_Os01g09740
Target Sequence 
ATTAACAATCCGTGCGCCTAACTTGGTTCGTCTTGAGCTGAAATGTGTTCGACCAGATATGCTCATTTTGGATACCCCAT
CCATGTTTACTCTGAAGTTAACAGTTGATAAACTTGGACCAAATGTCCAAGCCGATGGCCTTGTGAGTTTGAAAAATCTG
CGGATAGAGTCATTGGATCTAAAGTCCCTCTTGCAAGTATTTGCAGAGAATCATGATATCACTACATTAGAGCTTGAGCT
GCCCACTTCTACAAACAAATATGAACTTTTTGAAGCAGTGAAGCCCGAGTATCTTCTTCAGCTGTTTGCCGGCATCAGCG
AAGTCAAGTTGGCCCCTCGGTTTTCATGTGAAATGACGCATTGCCTGATGTTATGCACCAGCAACCAGTTTAGAAGCTGT
TTGAGGAGACTCCTGTTTCATCTACCGCCATTGAAGGATGTTCCTCATCTTGCACCCTTGTTTAATAACTGTGCTCCATC
TTGCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31630.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis