Browse Element(s) Details


Os.31630.1.S1_x_at

Description gb:AK069948.1
DB_XREF= gi:32979972
TID=Os.31630.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0671B11.26 (P0671B11.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035M20, full insert sequence.
FL= gb:AK099271.1 gb:AK069948.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0973011/11expressed protein
LOC_Os01g127201/11protein kinase, putative, expressed
LOC_Os04g474101/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09690OsAffx.21894.1.S1_x_at9/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.2.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09700Os.45926.1.S1_s_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700Os.6034.1.S1_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700OsAffx.14625.1.S1_x_at5/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09710OsAffx.22161.1.S1_at11/111+5006850..5009197hypothetical protein
LOC_Os01g09720NANA1+5011411..5012058Dof domain, zinc finger family protein
LOC_Os01g09730Os.31630.1.S1_x_at11/111+5013081..5015453expressed protein
LOC_Os01g09730Os.31630.2.S1_at11/111+5013081..5015453expressed protein
LOC_Os01g09740Os.31630.3.S1_at11/111+5014695..5016887F-box family protein, putative, expressed
LOC_Os01g09750Os.24087.1.S1_at11/111+5017890..502250623S rRNA methyltransferase RumA family protein, expressed
LOC_Os01g09750OsAffx.22118.1.S1_at1/111+5017890..502250623S rRNA methyltransferase RumA family protein, expressed
LOC_Os01g09760Os.45934.3.S1_x_at11/111+5026959..5033985DIRP family protein, expressed
LOC_Os01g09760Os.45934.3.S1_at11/111+5026959..5033985DIRP family protein, expressed
LOC_Os01g09770Os.45934.1.S1_at6/111+5034225..5037500expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31630.1.S1_x_at--750--8251Chr01:5014035..5014059 (25 bp)
GGCAGCTCGAGCAACTTCTCCTTCG
LOC_Os01g09730
Os.31630.1.S1_x_at--134--8131Chr01:5014187..5014211 (25 bp)
GGACTACGGCGGGATGTACCATCCG
LOC_Os01g09730
Os.31630.1.S1_x_at--674--8751Chr01:5014201..5014225 (25 bp)
TGTACCATCCGCTGAAGAAGGAGGC
LOC_Os01g09730
Os.31630.1.S1_x_at--7--9113Chr04:27912119..27912385 (25 bp)
TGCTCGTGGTCGTCGTGCTGCTGCT
LOC_Os04g47410
Os.31630.1.S1_x_at--416--9491Chr01:5014449..5014473 (25 bp)
TCTGCTCCTGACCAAGACATTTTTG
LOC_Os01g09730
Os.31630.1.S1_x_at--277--1291Chr01:5014501..5014525 (25 bp)
AGACCAACTCGGCTAATCCTGATAC
LOC_Os01g09730
Os.31630.1.S1_x_at--969--4831Chr01:5014512..5014536 (25 bp)
GCTAATCCTGATACAGCCATAGTTA
LOC_Os01g09730
Os.31630.1.S1_x_at--1143--10211Chr01:5014544..5014568 (25 bp)
TATTGCTACCAGATTAGGCATCACT
LOC_Os01g09730
Os.31630.1.S1_x_at--1086--911Chr01:5014559..5014583 (25 bp)
AGGCATCACTGCATGAGAGGATCAT
LOC_Os01g09730
Os.31630.1.S1_x_at--731--6291Chr01:5014622..5014646 (25 bp)
GATGATATTGTTCACTGTTGACAAG
LOC_Os01g09730
Os.31630.1.S1_x_at--338--8791Chr01:5014651..5014675 (25 bp)
TGTTATGCTAACCTGCAGATGGGCT
LOC_Os01g09730
Target Sequence 
GGCAGCTCGAGCAACTTCTCCTTCGCCTTCCCCATNNNNNNNNNNNNNNNNNNNNNNNNNATTGGCGGAGACGACGACGT
CGCNGAGGAAGAGGGACTACGGCGGGATGTACCATCCGCTGAAGAAGGAGGCGGAGCAGCAGCAGGCGGCGTCGCCGGCG
TCGGCGTTCGAGGAGATGACGCCGGAGGAGGAGCGGCGGCGGCGGCGGAGCTGGTGGTGCTGCTGCTGCGGCGAGTGCTG
CGGCTGCTGCTGGTTCGCCTGCTCGTGGTCGTCGTGCTGCTGCTGCTGCCGGTGGCGGTGGTGCAGCCGCTGCAGCTGCA
GCTGCCCAACCTTCTGCCGCCGCAACTAGTGCCTCTCTGCTCCTGACCAAGACATTTTTGGCGGGAAAAGATGAAGGGAA
AAAACCGAGACCAACTCGGCTAATCCTGATACAGCCATAGTTAAATTAATTATTGCTACCAGATTAGGCATCACTGCATG
AGAGGATCATATCATATGTATGCATGTGCAGATGGGTAAAAAGATGAAGATGATATTGTTCACTGTTGACAAGGAAATGT
TATGCTAACCTGCAGATGGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31630.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis