Browse Element(s) Details


OsAffx.22118.1.S1_at

Description gb:NM_188404.1
DB_XREF= gi:34903891
TID=OsAffx.22118.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g097501/1123S rRNA methyltransferase RumA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09700Os.45926.1.S1_s_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700Os.6034.1.S1_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700OsAffx.14625.1.S1_x_at5/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09710OsAffx.22161.1.S1_at11/111+5006850..5009197hypothetical protein
LOC_Os01g09720NANA1+5011411..5012058Dof domain, zinc finger family protein
LOC_Os01g09730Os.31630.1.S1_x_at11/111+5013081..5015453expressed protein
LOC_Os01g09730Os.31630.2.S1_at11/111+5013081..5015453expressed protein
LOC_Os01g09740Os.31630.3.S1_at11/111+5014695..5016887F-box family protein, putative, expressed
LOC_Os01g09750Os.24087.1.S1_at11/111+5017890..502250623S rRNA methyltransferase RumA family protein, expressed
LOC_Os01g09750OsAffx.22118.1.S1_at1/111+5017890..502250623S rRNA methyltransferase RumA family protein, expressed
LOC_Os01g09760Os.45934.3.S1_x_at11/111+5026959..5033985DIRP family protein, expressed
LOC_Os01g09760Os.45934.3.S1_at11/111+5026959..5033985DIRP family protein, expressed
LOC_Os01g09770Os.45934.1.S1_at6/111+5034225..5037500expressed protein
LOC_Os01g09780Os.17112.1.S1_at1/111+5042833..5043622NA

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008173molecular_functionRNA methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22118.1.S1_at--408--795Chr06:492595..492614 (20 bp)
ATGGTTTGGCAGGACTTTTAGAAAT
NONE
OsAffx.22118.1.S1_at--972--1411Chr01:6088908..6088927 (20 bp)
AGAAATAATCCAGATCAGCCGATCC
NONE
OsAffx.22118.1.S1_at--556--6291Chr01:6088923..6088947 (25 bp)
GATCCCACGTCCTGGTTTTTGTCTT
NONE
OsAffx.22118.1.S1_at--808--6811Chr01:6088937..6088961 (25 bp)
GTTTTTGTCTTTGCCTTCCACGCAA
NONE
OsAffx.22118.1.S1_at--34--9171Chr01:6088948..6088972 (25 bp)
TGCCTTCCACGCAAACAGGGAGTAC
NONE
OsAffx.22118.1.S1_at--85--5232Chr01:6088989..6089013 (25 bp)
GAATTTCAGGTTTGTCTTGGCACAT
NONE
OsAffx.22118.1.S1_at--37--10871Chr01:6089005..6089029 (25 bp)
TTGGCACATGCACGTACGGCCCGTG
NONE
OsAffx.22118.1.S1_at--67--7011Chr01:6089018..6089042 (25 bp)
GTACGGCCCGTGCAAGAGTCCTATT
NONE
OsAffx.22118.1.S1_at--470--4531Chr01:6089023..6089047 (25 bp)
GCCCGTGCAAGAGTCCTATTGTACT
NONE
OsAffx.22118.1.S1_at--781--5171Chr01:6089029..6089053 (25 bp)
GCAAGAGTCCTATTGTACTCTAGTA
NONE
OsAffx.22118.1.S1_at--1037--1171Chr01:6089050..6089074 (25 bp)
AGTACTGTTAGTACGTACGCTAGTA
NONE
Target Sequence 
ATGGTTTGGCAGGACTTTTAGAAATAATCCAGATCAGCCGATCCCACGTCCTGGTTTTTGTCTTTGCCTTCCACGCAAAC
AGGGAGTACAATTGTACAGTATTCAGAATTTCAGGTTTGTCTTGGCACATGCACGTACGGCCCGTGCAAGAGTCCTATTG
TACTCTAGTACTGTTAGTACGTACGCTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis