Browse Element(s) Details


Os.45926.1.S1_s_at

Description gb:NM_189686.1
DB_XREF= gi:34906455
GEN=P0671B11.20
TID=Os.45926.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45926 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative 1-aminocyclopropane-1-carboxylic acid synthase (P0671B11.20), mRNA.
PROD=putative 1-aminocyclopropane-1-carboxylic acidsynthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0970011/111-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os05g107802/111-aminocyclopropane-1-carboxylate synthase 7, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09660OsAffx.23171.1.S1_at11/111+4975900..4976830heavy metal-associated domain containing protein
LOC_Os01g09670Os.625.1.S1_at11/111+4978984..4981945Pollen-specific protein SF21, putative, expressed
LOC_Os01g09680NANA1+4984506..4985003hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_x_at9/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.2.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09700Os.45926.1.S1_s_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700Os.6034.1.S1_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700OsAffx.14625.1.S1_x_at5/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09710OsAffx.22161.1.S1_at11/111+5006850..5009197hypothetical protein
LOC_Os01g09720NANA1+5011411..5012058Dof domain, zinc finger family protein
LOC_Os01g09730Os.31630.1.S1_x_at11/111+5013081..5015453expressed protein
LOC_Os01g09730Os.31630.2.S1_at11/111+5013081..5015453expressed protein
LOC_Os01g09740Os.31630.3.S1_at11/111+5014695..5016887F-box family protein, putative, expressed
LOC_Os01g09750Os.24087.1.S1_at11/111+5017890..502250623S rRNA methyltransferase RumA family protein, expressed
LOC_Os01g09750OsAffx.22118.1.S1_at1/111+5017890..502250623S rRNA methyltransferase RumA family protein, expressed
LOC_Os01g09760Os.45934.3.S1_x_at11/111+5026959..5033985DIRP family protein, expressed
LOC_Os01g09760Os.45934.3.S1_at11/111+5026959..5033985DIRP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009693biological_processethylene biosynthesis
GO:0009735biological_processresponse to cytokinin stimulus
GO:0016847molecular_function1-aminocyclopropane-1-carboxylate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45926.1.S1_s_at--803--3191Chr01:4999555..4999579 (25 bp)
CAATGCTGGGCTGTTCGTGTGGATG
LOC_Os01g09700
Os.45926.1.S1_s_at--1032--9152Chr05:5934005..5934095 (25 bp)
TGCGCCAGGCGAAGCTGAACATCTC
LOC_Os05g10780
Os.45926.1.S1_s_at--42--912Chr05:5933999..5934023 (25 bp)
AGGCGAAGCTGAACATCTCGCCGGG
LOC_Os05g10780
Os.45926.1.S1_s_at--1124--7191Chr01:4999432..4999456 (25 bp)
GTCGTCGTGCCATTGCTCGGAGGCC
LOC_Os01g09700
Os.45926.1.S1_s_at--143--4331Chr01:4999423..4999447 (25 bp)
CCATTGCTCGGAGGCCGGCTGGTTC
LOC_Os01g09700
Os.45926.1.S1_s_at--938--10631Chr01:4999389..4999413 (25 bp)
TTCGCCAACATGAGCTTGGACACGC
LOC_Os01g09700
Os.45926.1.S1_s_at--724--1531Chr01:4999377..4999401 (25 bp)
AGCTTGGACACGCTGGATCTTGCAC
LOC_Os01g09700
Os.45926.1.S1_s_at--887--7951Chr01:4999363..4999387 (25 bp)
GGATCTTGCACTCCACAGGATAAGC
LOC_Os01g09700
Os.45926.1.S1_s_at--597--1991Chr01:4999354..4999378 (25 bp)
ACTCCACAGGATAAGCCGCTTCATG
LOC_Os01g09700
Os.45926.1.S1_s_at--245--2671Chr01:4999342..4999366 (25 bp)
AAGCCGCTTCATGGACACGTGGAAT
LOC_Os01g09700
Os.45926.1.S1_s_at--1125--5611Chr01:4999329..4999353 (25 bp)
GACACGTGGAATGGAACAAAGCAAC
LOC_Os01g09700
Target Sequence 
CAATGCTGGGCTGTTCGTGTGGATGGACATGCGGCGGCTGCTGCTCGGCGGCGGCGGCGTCGGCGGCGAGCTGAGGCTGT
GGGAGAAGCTGCTGCGCCAGGCGAAGCTGAACATCTCGCCGGGGTCGTCGTGCCATTGCTCGGAGGCCGGCTGGTTCAGG
GTGTGCTTCGCCAACATGAGCTTGGACACGCTGGATCTTGCACTCCACAGGATAAGCCGCTTCATGGACACGTGGAATGG
AACAAAGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45926.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis