Browse Element(s) Details


OsAffx.14625.1.S1_x_at

Description tigr:9633.m00941
TID=OsAffx.14625.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=aminotransferase, classes I and II, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1078011/111-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os01g097005/111-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os05g254901/111-aminocyclopropane-1-carboxylate synthase 7, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10760OsAffx.17654.1.S1_at10/115+5908982..5912701transposon protein, putative, unclassified, expressed
LOC_Os05g10760OsAffx.17654.3.S1_x_at9/115+5908982..5912701transposon protein, putative, unclassified, expressed
LOC_Os05g10770Os.10868.1.S1_at11/115+5919475..5926166jmjC domain containing protein, expressed
LOC_Os05g10780OsAffx.14625.1.S1_at11/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10780OsAffx.14625.1.S1_x_at11/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10780Os.45926.1.S1_s_at2/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10790OsAffx.14626.1.S1_at10/115+5940307..5942141hypothetical protein
LOC_Os05g10800Os.52890.1.S1_at11/115+5944167..5945668expressed protein
LOC_Os05g10810Os.17391.1.S1_at11/115+5951263..5957940MBOAT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009693biological_processethylene biosynthesis
GO:0009735biological_processresponse to cytokinin stimulus
GO:0016847molecular_function1-aminocyclopropane-1-carboxylate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14625.1.S1_x_at--1013--8391Chr05:5934380..5934404 (25 bp)
GGCGCGTCCACGTCGTGTACAGCCT
LOC_Os05g10780
OsAffx.14625.1.S1_x_at--598--8352Chr05:5934321..5934345 (25 bp)
GGCGTGGTCTACTCCTACAACGACG
LOC_Os05g10780
OsAffx.14625.1.S1_x_at--871--8373Chr05:5934278..5934302 (25 bp)
GGCGCATGTCGAGCTTCACGCTGGT
LOC_Os05g10780
OsAffx.14625.1.S1_x_at--952--9672Chr05:5934263..5934287 (25 bp)
TCACGCTGGTGTCGTCGCAGACGCA
LOC_Os05g10780
OsAffx.14625.1.S1_x_at--932--6711Chr05:5934088..5934112 (25 bp)
GTTCGTGTGGGTGGACATGCGCCGC
LOC_Os05g10780
OsAffx.14625.1.S1_x_at--1123--7231Chr05:5934006..5934030 (25 bp)
GTCGCCGAGGCGAAGCTGAACATCT
LOC_Os05g10780
OsAffx.14625.1.S1_x_at--593--7492Chr05:5933947..5933971 (25 bp)
GTGGTTCAGGGTGTGCTTCGCCAAC
LOC_Os05g10780
OsAffx.14625.1.S1_x_at--305--8692Chr05:5933936..5933960 (25 bp)
TGTGCTTCGCCAACATGAGCTTGGA
LOC_Os05g10780
OsAffx.14625.1.S1_x_at--781--3611Chr05:5933917..5933941 (25 bp)
CTTGGAGACGCTGGACGTTGCACTC
LOC_Os05g10780
OsAffx.14625.1.S1_x_at--276--5771Chr05:5933904..5933928 (25 bp)
GACGTTGCACTCCATAGACTGGGCT
LOC_Os05g10780
OsAffx.14625.1.S1_x_at--561--1991Chr05:5933896..5933920 (25 bp)
ACTCCATAGACTGGGCTGCTTCATC
LOC_Os05g10780
Target Sequence 
GGCGCGTCCACGTCGTGTACAGCCTCTCCAAGGACCTGGGCCTCCCGGGGTTCCGCGTCGGCGTGGTCTACTCCTACAAC
GACGCCGTGGTGGCCGCGGCGAGGCGCATGTCGAGCTTCACGCTGGTGTCGTCGCAGACGCAGCGGACGCTCGCCGCGAT
GCTGTCCGACGCGGCGTTCGCGGCGGCGTACGTGCGCTCCAACCGCGACCGCCTCCGGGAGCGGCACGCGCGCGCGGTGG
CCGGGCTGCGGCGCGCCGGCGTGGCGTGCCTCCGAGGCGCCAACGCCGGGCTGTTCGTGTGGGTGGACATGCGCCGCCTG
CTGGGCGACGGCGAGGCCACCGTCGCCGGCGAGCTGAGGCTGTGGCGGCGCGTGGTCGCCGAGGCGAAGCTGAACATCTC
GCCGGGGTCGTCGTGCCATTGCCGGGAGCCGGGGTGGTTCAGGGTGTGCTTCGCCAACATGAGCTTGGAGACGCTGGACG
TTGCACTCCATAGACTGGGCTGCTTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14625.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis