Browse Element(s) Details


Os.10868.1.S1_at

Description gb:AK121381.1
DB_XREF= gi:37991004
TID=Os.10868.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10868 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127H13, full insert sequence.
FL= gb:AK121381.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1077011/11jmjC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10740Os.7826.1.S1_a_at11/115+5893355..5896224Pollen-specific protein SF21, putative, expressed
LOC_Os05g10750NANA5+5903561..5904178hypothetical protein
LOC_Os05g10760OsAffx.17654.1.S1_at10/115+5908982..5912701transposon protein, putative, unclassified, expressed
LOC_Os05g10760OsAffx.17654.3.S1_x_at9/115+5908982..5912701transposon protein, putative, unclassified, expressed
LOC_Os05g10770Os.10868.1.S1_at11/115+5919475..5926166jmjC domain containing protein, expressed
LOC_Os05g10780OsAffx.14625.1.S1_at11/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10780OsAffx.14625.1.S1_x_at11/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10780Os.45926.1.S1_s_at2/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10790OsAffx.14626.1.S1_at10/115+5940307..5942141hypothetical protein
LOC_Os05g10800Os.52890.1.S1_at11/115+5944167..5945668expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10868.1.S1_at--838--3931Chr05:5925587..5925611 (25 bp)
CGGCATATGTTATCTCAGGGTCCAC
LOC_Os05g10770
Os.10868.1.S1_at--381--7111Chr05:5925630..5925654 (25 bp)
GTCTCATCCAAAGGGCTAACCGGGA
LOC_Os05g10770
Os.10868.1.S1_at--241--5111Chr05:5925656..5925680 (25 bp)
GAATTGCAAGTCCTGCGGAGTTTGA
LOC_Os05g10770
Os.10868.1.S1_at--217--1771Chr05:5925778..5925802 (25 bp)
ACCGGCTGGCTGTTGTACTTTAGAT
LOC_Os05g10770
Os.10868.1.S1_at--130--451Chr05:5925839..5925863 (25 bp)
ATCTAAAACCGAGGCTTGCTTCTCC
LOC_Os05g10770
Os.10868.1.S1_at--601--4451Chr05:5925993..5926017 (25 bp)
GCCTCATCTTTCCTGTAAAACTCAT
LOC_Os05g10770
Os.10868.1.S1_at--469--6631Chr05:5926018..5926042 (25 bp)
GTTGTGTTCAGCTGTCCAGTTAAGT
LOC_Os05g10770
Os.10868.1.S1_at--680--7671Chr05:5926044..5926068 (25 bp)
GGGTTGCTTCTAGTTCAGAGATCTT
LOC_Os05g10770
Os.10868.1.S1_at--1003--2271Chr05:5926079..5926103 (25 bp)
AAATGTCCATGCCAGATGTATCTGC
LOC_Os05g10770
Os.10868.1.S1_at--731--2131Chr05:5926126..5926150 (25 bp)
ACAGTGATTTTGTGCTGCTGCTAGC
LOC_Os05g10770
Os.10868.1.S1_at--764--4751Chr05:5926142..5926166 (25 bp)
GCTGCTAGCAGGCACTCGAGTTTTC
LOC_Os05g10770
Target Sequence 
CGGCATATGTTATCTCAGGGTCCACCTCTCCTTGCCCTGAGGGGTCTCATCCAAAGGGCTAACCGGGATGAATTGCAAGT
CCTGCGGAGTTTGATGACGAACAGCAACAATTTGGATGATAGCTCCAGGCANCAGGCCGNGCACATTATCGAANAGGAGA
TTGCGAAGCAATTGTGNTGAGAAGGGTAAATACCGGCTGGCTGTTGTACTTTAGATGGCATGAATATTTTTTTTTCCGAC
AGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATACC
ATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAG
CCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTTCAGCTGTCCAGTTAAGTAGGGTTGCTTCTAGTTCAGAGATC
TTTGGACAGTCAAAATGTCCATGCCAGATGTATCTGCTATGTTATTACTTTCCAGTCTAACAGTGATTTTGTGCTGCTGC
TAGCAGGCACTCGAGTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis