Browse Element(s) Details


Os.7826.1.S1_a_at

Description gb:CB648630
DB_XREF= gi:29643623
DB_XREF=OSJNEb12B19.r
CLONE=OSJNEb12B19
TID=Os.7826.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.7826 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T48538 (A.thaliana) T48538 hypothetical protein T22P22.180 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1074011/11Pollen-specific protein SF21, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10700OsAffx.30350.1.S1_at1/115+5866463..5871651retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g10710NANA5+5873281..5876079hypothetical protein
LOC_Os05g10720OsAffx.26816.1.S1_at11/115+5884727..5885110hypothetical protein
LOC_Os05g10730Os.7826.2.A1_at11/115+5887293..5893730multidrug resistance associated protein 1, putative, expressed
LOC_Os05g10740Os.7826.1.S1_a_at11/115+5893355..5896224Pollen-specific protein SF21, putative, expressed
LOC_Os05g10750NANA5+5903561..5904178hypothetical protein
LOC_Os05g10760OsAffx.17654.1.S1_at10/115+5908982..5912701transposon protein, putative, unclassified, expressed
LOC_Os05g10760OsAffx.17654.3.S1_x_at9/115+5908982..5912701transposon protein, putative, unclassified, expressed
LOC_Os05g10770Os.10868.1.S1_at11/115+5919475..5926166jmjC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7826.1.S1_a_at--658--10811Chr05:5893892..5893916 (25 bp)
TTGTGGCTCCCTTGTAACCGAGGAG
LOC_Os05g10740
Os.7826.1.S1_a_at--551--1691Chr05:5893866..5893890 (25 bp)
AGCCACATGCTATGCTGATGCCGAT
LOC_Os05g10740
Os.7826.1.S1_a_at--218--7591Chr05:5893819..5893843 (25 bp)
GGGCTTTACAGACCGTACCAGATGA
LOC_Os05g10740
Os.7826.1.S1_a_at--705--6971Chr05:5893805..5893829 (25 bp)
GTACCAGATGAACAGCAGCCCTCGC
LOC_Os05g10740
Os.7826.1.S1_a_at--25--731Chr05:5893766..5893790 (25 bp)
ATGTTGTATATCACCGGAGTTGCTA
LOC_Os05g10740
Os.7826.1.S1_a_at--315--8051Chr05:5893751..5893775 (25 bp)
GGAGTTGCTATCTCCTGAGAGCATG
LOC_Os05g10740
Os.7826.1.S1_a_at--439--2391Chr05:5893705..5893729 (25 bp)
AAGACTCGAATAGCCGTGGATTACT
LOC_Os05g10740
Os.7826.1.S1_a_at--166--5471Chr05:5893651..5893675 (25 bp)
GAACTGCTTTGCTTACAGCTCAGAG
LOC_Os05g10740
Os.7826.1.S1_a_at--818--2551Chr05:5893626..5893650 (25 bp)
AACTGAAGATAGTCCTGGGCTGGTT
LOC_Os05g10740
Os.7826.1.S1_a_at--1121--8651Chr05:5893568..5893592 (25 bp)
TGTGTTTGAGTATGTACCCTGGCAA
LOC_Os05g10740
Os.7826.1.S1_a_at--982--8771Chr05:5893425..5893449 (25 bp)
TGTTTTTGTAGTCAGCAGTCAGCAG
LOC_Os05g10740
Target Sequence 
TTGTGGCTCCCTTGTAACCGAGGAGCAGCCACATGCTATGCTGATGCCGATGGAGTACTTCCTCATGGGATACGGGCTTT
ACAGACCGTACCAGATGAACAGCAGCCCTCGCAGTCCGCTAAGTCCATGTTGTATATCACCGGAGTTGCTATCTCCTGAG
AGCATGGGAGTGAAGCTGAAGCCGATCAAGACTCGAATAGCCGTGGATTACTAACGCAGGCAAGATTTCAGCAATCAGAA
TGAACTGCTTTGCTTACAGCTCAGAGAACTGAAGATAGTCCTGGGCTGGTTGAAATGTTACCGTAGAGACGCAAAGTTTG
TTCATGTGTTTGAGTATGTACCCTGGCAAAAAAAGCCTCCTTTTGTTGTATATATAGCCTTATAATCAGGAAAGTTCTAC
ATCAGTAAGACAGAAAAGAGGGAAATCTGTAGTGGGGGATGTGTTCAGGGTGGTTCTTTGTTCAATTTGTTTTTGTAGTC
AGCAGTCAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7826.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis